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{"arbt_e": -1.0}, "id": "EX_arbt_e", "gene_reaction_rule": ""}, {"name": "Aerobactin minus Fe3 exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_arbtn_LPAREN_e_RPAREN_"]}, "metabolites": {"arbtn_e": -1.0}, "id": "EX_arbtn_e", "gene_reaction_rule": ""}, {"name": "Aerobactin exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_arbtn_DASH_fe3_LPAREN_e_RPAREN_"]}, "metabolites": {"arbtn_fe3_e": -1.0}, "id": "EX_arbtn_fe3_e", "gene_reaction_rule": ""}, {"name": "L-Arginine exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_arg_DASH_L_LPAREN_e_RPAREN_"]}, "metabolites": {"arg__L_e": -1.0}, "id": "EX_arg__L_e", "gene_reaction_rule": ""}, {"name": "L-Ascorbate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_ascb_DASH_L_LPAREN_e_RPAREN_"]}, "metabolites": {"ascb__L_e": -1.0}, "id": "EX_ascb__L_e", "gene_reaction_rule": ""}, {"name": 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"Fe(III)hydroxamate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_fe3hox_LPAREN_e_RPAREN_"]}, "metabolites": {"fe3hox_e": -1.0}, "id": "EX_fe3hox_e", "gene_reaction_rule": ""}, {"name": "Fe(III)hydoxamate, unloaded exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_fe3hox_DASH_un_LPAREN_e_RPAREN_"]}, "metabolites": {"fe3hox_un_e": -1.0}, "id": "EX_fe3hox_un_e", "gene_reaction_rule": ""}, {"name": "Ferrichrome exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_fecrm_LPAREN_e_RPAREN_"]}, "metabolites": {"fecrm_e": -1.0}, "id": "EX_fecrm_e", "gene_reaction_rule": ""}, {"name": "Ferrichrome minus Fe(III) exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_fecrm_DASH_un_LPAREN_e_RPAREN_"]}, "metabolites": {"fecrm_un_e": -1.0}, "id": "EX_fecrm_un_e", "gene_reaction_rule": ""}, {"name": "Fe-enterobactin exchange", "upper_bound": 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["EX_lcts_LPAREN_e_RPAREN_"]}, "metabolites": {"lcts_e": -1.0}, "id": "EX_lcts_e", "gene_reaction_rule": ""}, {"name": "L-Leucine exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_leu_DASH_L_LPAREN_e_RPAREN_"]}, "metabolites": {"leu__L_e": -1.0}, "id": "EX_leu__L_e", "gene_reaction_rule": ""}, {"name": "KDO(2)-lipid (A) exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_lipa_LPAREN_e_RPAREN_"]}, "metabolites": {"lipa_e": -1.0}, "id": "EX_lipa_e", "gene_reaction_rule": ""}, {"name": "Cold adapted KDO(2)-lipid (A) exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_lipa_cold_LPAREN_e_RPAREN_"]}, "metabolites": {"lipa_cold_e": -1.0}, "id": "EX_lipa_cold_e", "gene_reaction_rule": ""}, {"name": "Lipoate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_lipoate_LPAREN_e_RPAREN_"]}, "metabolites": {"lipoate_e": -1.0}, "id": 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diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["23CUMPtex"]}, "metabolites": {"23cump_p": 1.0, "23cump_e": -1.0}, "id": "23CUMPtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "2,3-diaminopropionate transport in via proton symport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["23DAPPAt2pp"]}, "metabolites": {"h_p": -1.0, "h_c": 1.0, "23dappa_c": 1.0, "23dappa_p": -1.0}, "id": "23DAPPAt2pp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "2,3-diaminopropionate transport via diffusion", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["23DAPPAtex"]}, "metabolites": {"23dappa_e": -1.0, "23dappa_p": 1.0}, "id": "23DAPPAtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "2',3'-cyclic-nucleotide phosphodiesterase (UMP) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["23PDE2pp"]}, "metabolites": {"h2o_p": -1.0, "23cump_p": -1.0, "3ump_p": 1.0, "h_p": 1.0}, "id": "23PDE2pp", "gene_reaction_rule": "ECD_04085"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "2',3'-cyclic-nucleotide phosphodiesterase (CMP) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["23PDE4pp"]}, "metabolites": {"h2o_p": -1.0, "3cmp_p": 1.0, "23ccmp_p": -1.0, "h_p": 1.0}, "id": "23PDE4pp", "gene_reaction_rule": "ECD_04085"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "2',3'-cyclic-nucleotide phosphodiesterase (AMP) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["23PDE7pp"]}, "metabolites": {"3amp_p": 1.0, "h2o_p": -1.0, "h_p": 1.0, "23camp_p": -1.0}, "id": "23PDE7pp", "gene_reaction_rule": "ECD_04085"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "2',3'-cyclic-nucleotide phosphodiesterase (GMP) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["23PDE9pp"]}, "metabolites": {"23cgmp_p": -1.0, "3gmp_p": 1.0, "h_p": 1.0, "h2o_p": -1.0}, "id": "23PDE9pp", "gene_reaction_rule": "ECD_04085"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Meso-2,6-Diaminoheptanedioate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["26DAHtex"]}, "metabolites": {"26dap__M_e": -1.0, "26dap__M_p": 1.0}, "id": "26DAHtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphatidate (n-C12:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPA120tipp"]}, "metabolites": {"2ddecg3p_c": 1.0, "2ddecg3p_p": -1.0}, "id": "2AGPA120tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphatidate (n-C14:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPA140tipp"]}, "metabolites": {"2tdecg3p_c": 1.0, "2tdecg3p_p": -1.0}, "id": "2AGPA140tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphatidate (n-C14:1) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPA141tipp"]}, "metabolites": {"2tdec7eg3p_p": -1.0, "2tdec7eg3p_c": 1.0}, "id": "2AGPA141tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphatidate (n-C16:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPA160tipp"]}, "metabolites": {"2hdecg3p_c": 1.0, "2hdecg3p_p": -1.0}, "id": "2AGPA160tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphatidate (n-C16:1) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPA161tipp"]}, "metabolites": {"2hdec9eg3p_c": 1.0, "2hdec9eg3p_p": -1.0}, "id": "2AGPA161tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphatidate (n-C18:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPA180tipp"]}, "metabolites": {"2odecg3p_p": -1.0, "2odecg3p_c": 1.0}, "id": "2AGPA180tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphatidate (n-C18:1) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPA181tipp"]}, "metabolites": {"2odec11eg3p_p": -1.0, "2odec11eg3p_c": 1.0}, "id": "2AGPA181tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPE120tipp"]}, "metabolites": {"2agpe120_p": -1.0, "2agpe120_c": 1.0}, "id": "2AGPE120tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPE140tipp"]}, "metabolites": {"2agpe140_c": 1.0, "2agpe140_p": -1.0}, "id": "2AGPE140tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPE141tipp"]}, "metabolites": {"2agpe141_c": 1.0, "2agpe141_p": -1.0}, "id": "2AGPE141tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPE160tipp"]}, "metabolites": {"2agpe160_p": -1.0, "2agpe160_c": 1.0}, "id": "2AGPE160tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPE161tipp"]}, "metabolites": {"2agpe161_p": -1.0, "2agpe161_c": 1.0}, "id": "2AGPE161tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPE180tipp"]}, "metabolites": {"2agpe180_c": 1.0, "2agpe180_p": -1.0}, "id": "2AGPE180tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPE181tipp"]}, "metabolites": {"2agpe181_c": 1.0, "2agpe181_p": -1.0}, "id": "2AGPE181tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "2-acyl-glycerophospho-ethanolamine acyltransferase (n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPEAT120"]}, "metabolites": {"pe120_c": 1.0, 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acyltransferase (n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPEAT160"]}, "metabolites": {"atp_c": -1.0, "2agpe160_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0, "hdca_c": -1.0, "pe160_c": 1.0}, "id": "2AGPEAT160", "gene_reaction_rule": "ECD_02684"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "2-acyl-glycerophospho-ethanolamine acyltransferase (n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPEAT161"]}, "metabolites": {"atp_c": -1.0, "ppi_c": 1.0, "2agpe161_c": -1.0, "hdcea_c": -1.0, "pe161_c": 1.0, "amp_c": 1.0}, "id": "2AGPEAT161", "gene_reaction_rule": "ECD_02684"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "2-acyl-glycerophospho-ethanolamine acyltransferase (n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPEAT180"]}, "metabolites": {"pe180_c": 1.0, "atp_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0, "ocdca_c": -1.0, "2agpe180_c": -1.0}, "id": 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{"original_bigg_ids": ["2AGPG140tipp"]}, "metabolites": {"2agpg140_p": -1.0, "2agpg140_c": 1.0}, "id": "2AGPG140tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPG141tipp"]}, "metabolites": {"2agpg141_p": -1.0, "2agpg141_c": 1.0}, "id": "2AGPG141tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPG160tipp"]}, "metabolites": {"2agpg160_c": 1.0, "2agpg160_p": -1.0}, "id": "2AGPG160tipp", "gene_reaction_rule": "ECD_02683"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1) transporter via facilitated 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"2-acyl-glycerophospho-glycerol acyltransferase (n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPGAT120"]}, "metabolites": {"atp_c": -1.0, "ddca_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0, "pg120_c": 1.0, "2agpg120_c": -1.0}, "id": "2AGPGAT120", "gene_reaction_rule": "ECD_02684"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "2-acyl-glycerophospho-glycerol acyltransferase (n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPGAT140"]}, "metabolites": {"atp_c": -1.0, "ppi_c": 1.0, "pg140_c": 1.0, "amp_c": 1.0, "2agpg140_c": -1.0, "ttdca_c": -1.0}, "id": "2AGPGAT140", "gene_reaction_rule": "ECD_02684"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "2-acyl-glycerophospho-glycerol acyltransferase (n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPGAT141"]}, "metabolites": {"2agpg141_c": -1.0, "atp_c": -1.0, "pg141_c": 1.0, "ppi_c": 1.0, "amp_c": 1.0, 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"34dhpac_p": 1.0, "nh4_p": 1.0, "h2o_p": -1.0, "o2_p": -1.0, "dopa_p": -1.0}, "id": "42A12BOOXpp", "gene_reaction_rule": "ECD_01358"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "4-hydroxyphenylacetaldehyde transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["4HOXPACDtex"]}, "metabolites": {"4hoxpacd_p": 1.0, "4hoxpacd_e": -1.0}, "id": "4HOXPACDtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "4-Hydroxy-L-threonine synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["4HTHRS"]}, "metabolites": {"h2o_c": -1.0, "phthr_c": -1.0, "pi_c": 1.0, "4hthr_c": 1.0}, "id": "4HTHRS", "gene_reaction_rule": "ECD_00004"}, {"subsystem": "Murein Recycling", "name": "Tetrapeptide L,D-carboxypeptidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": 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"LalaDgluMdapDala (pentapeptide) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["4PEPTtex"]}, "metabolites": {"LalaDgluMdapDala_p": 1.0, "LalaDgluMdapDala_e": -1.0}, "id": "4PEPTtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "5-dehydro-D-gluconate reductase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["5DGLCNR"]}, "metabolites": {"5dglcn_c": -1.0, "glcn_c": 1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0}, "id": "5DGLCNR", "gene_reaction_rule": "ECD_04132"}, {"subsystem": "Transport, Inner Membrane", "name": "5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["5DGLCNt2rpp"]}, "metabolites": {"5dglcn_p": -1.0, "5dglcn_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "5DGLCNt2rpp", 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Metabolism", "name": "Acetyl-CoA C-acyltransferase (hexanoyl-CoA) (r)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACACT3r"]}, "metabolites": {"coa_c": 1.0, "hxcoa_c": -1.0, "3oocoa_c": 1.0, "accoa_c": -1.0}, "id": "ACACT3r", "gene_reaction_rule": "ECD_02266 or ECD_03736"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acetyl-CoA C-acyltransferase (octanoyl-CoA) (r)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACACT4r"]}, "metabolites": {"coa_c": 1.0, "3odcoa_c": 1.0, "occoa_c": -1.0, "accoa_c": -1.0}, "id": "ACACT4r", "gene_reaction_rule": "ECD_02266 or ECD_03736"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acetyl-CoA C-acyltransferase (decanoyl-CoA) (r)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACACT5r"]}, "metabolites": {"3oddcoa_c": 1.0, "coa_c": 1.0, "dcacoa_c": -1.0, "accoa_c": -1.0}, "id": "ACACT5r", "gene_reaction_rule": "ECD_02266 or ECD_03736"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acetyl-CoA C-acyltransferase (dodecanoyl-CoA) (r)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACACT6r"]}, "metabolites": {"ddcacoa_c": -1.0, "3otdcoa_c": 1.0, "coa_c": 1.0, "accoa_c": -1.0}, "id": "ACACT6r", "gene_reaction_rule": "ECD_02266 or ECD_03736"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acetyl-CoA C-acyltransferase (tetradecanoyl-CoA) (r)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACACT7r"]}, "metabolites": {"coa_c": 1.0, "3ohdcoa_c": 1.0, "tdcoa_c": -1.0, "accoa_c": -1.0}, "id": "ACACT7r", "gene_reaction_rule": "ECD_02266 or ECD_03736"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acetyl-CoA acyltransferase (hexadecanoyl-CoA), (r)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACACT8r"]}, "metabolites": {"pmtcoa_c": 1.0, "3oodcoa_c": -1.0, "coa_c": -1.0, "accoa_c": 1.0}, "id": "ACACT8r", "gene_reaction_rule": "ECD_02266 or ECD_03736"}, {"subsystem": "Transport, Inner Membrane", "name": "Acetoacetate transport via proton symport  (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACACt2pp"]}, "metabolites": {"acac_c": 1.0, "acac_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "ACACt2pp", "gene_reaction_rule": "ECD_02150"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Acetoacetate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACACtex"]}, "metabolites": {"acac_p": 1.0, "acac_e": -1.0}, "id": "ACACtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Pyruvate Metabolism", "name": "Acetaldehyde dehydrogenase (acetylating)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACALD"]}, "metabolites": {"accoa_c": 1.0, "acald_c": -1.0, "coa_c": -1.0, "h_c": 1.0, "nad_c": -1.0, "nadh_c": 1.0}, "id": "ACALD", "gene_reaction_rule": "ECD_00305 or ECD_01215"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Acetaldehyde transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACALDtex"]}, "metabolites": {"acald_p": 1.0, "acald_e": -1.0}, "id": "ACALDtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Acetaldehyde reversible transport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACALDtpp"]}, "metabolites": {"acald_c": 1.0, "acald_p": -1.0}, "id": "ACALDtpp", "gene_reaction_rule": "s0001"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Acetyl-CoA:anthranilate acetyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACANTHAT"]}, "metabolites": {"anth_c": -1.0, "coa_c": 1.0, "accoa_c": -1.0, "acanth_c": 1.0}, "id": "ACANTHAT", "gene_reaction_rule": "ECD_01421"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Adenosyl cobinamide phosphate guanyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACBIPGT"]}, "metabolites": {"adocbip_c": -1.0, "ppi_c": 1.0, "gtp_c": -1.0, "h_c": -1.0, "agdpcbi_c": 1.0}, "id": "ACBIPGT", "gene_reaction_rule": "ECD_01902"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acetyl-CoA carboxylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACCOAC"]}, "metabolites": {"malcoa_c": 1.0, "accoa_c": -1.0, "atp_c": -1.0, "hco3_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "ACCOAC", "gene_reaction_rule": "ECD_00183 and ECD_02241 and ECD_03113 and ECD_03114"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Acetate-CoA ligase (ADP-forming)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACCOAL"]}, "metabolites": {"adp_c": 1.0, "atp_c": -1.0, "ppa_c": -1.0, "coa_c": -1.0, "ppcoa_c": 1.0, "pi_c": 1.0}, "id": "ACCOAL", "gene_reaction_rule": "ECD_03941"}, {"subsystem": "Alternate Carbon Metabolism", "name": "N-acetyl-D-galactosamine 1-phosphatase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGAL1PPpp"]}, "metabolites": {"pi_p": 1.0, "h2o_p": -1.0, "acgal_p": 1.0, "acgal1p_p": -1.0}, "id": "ACGAL1PPpp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "N-acetyl-D-galactosamine 1-phosphate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACGAL1Ptex"]}, "metabolites": {"acgal1p_p": 1.0, "acgal1p_e": -1.0}, "id": "ACGAL1Ptex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "N-acetyl-D-galactosamine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACGALtex"]}, "metabolites": {"acgal_p": 1.0, "acgal_e": -1.0}, "id": "ACGALtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "N-acetyl-D-glucosamine 1-phosphatase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGAM1PPpp"]}, "metabolites": {"pi_p": 1.0, "h2o_p": -1.0, "acgam_p": 1.0, "acgam1p_p": -1.0}, "id": "ACGAM1PPpp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "N-acetyl-D-glucosamine 1-phosphate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACGAM1Ptex"]}, "metabolites": {"acgam1p_e": -1.0, "acgam1p_p": 1.0}, "id": "ACGAM1Ptex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Murein Recycling", "name": "N-acetylglucosamine kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGAMK"]}, "metabolites": {"acgam_c": -1.0, "acgam6p_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "ACGAMK", "gene_reaction_rule": "ECD_01120"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "UDP-N-acetylglucosamine:undecaprenylphosphate N-acetylglucosamine -1-phosphate transferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGAMT"]}, "metabolites": {"uacgam_c": -1.0, "ump_c": 1.0, "udcpp_c": -1.0, "unaga_c": 1.0}, "id": "ACGAMT", "gene_reaction_rule": "ECD_03662"}, {"subsystem": "Transport, Inner Membrane", "name": "N-Acetyl-D-glucosamine transport via PEP:Pyr PTS  (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGAptspp"]}, "metabolites": {"pep_c": -1.0, "pyr_c": 1.0, "acgam_p": -1.0, "acgam6p_c": 1.0}, "id": "ACGAptspp", "gene_reaction_rule": "(ECD_02317 and ECD_01097 and ECD_02315 and ECD_02316) or (ECD_00636 and ECD_02315 and ECD_02316)"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "N-Acetyl-D-glucosamine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACGAtex"]}, "metabolites": {"acgam_p": 1.0, "acgam_e": -1.0}, "id": "ACGAtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Acetylglutamate kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGK"]}, "metabolites": {"acg5p_c": 1.0, "acglu_c": -1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "ACGK", "gene_reaction_rule": "ECD_03844"}, {"subsystem": "Arginine and Proline Metabolism", "name": "N-acetylglutamate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGS"]}, "metabolites": {"glu__L_c": -1.0, "acglu_c": 1.0, "coa_c": 1.0, "h_c": 1.0, "accoa_c": -1.0}, "id": "ACGS", "gene_reaction_rule": "ECD_02666"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "2-aceto-2-hydroxybutanoate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACHBS"]}, "metabolites": {"2obut_c": -1.0, "2ahbut_c": 1.0, "pyr_c": -1.0, "co2_c": 1.0, "h_c": -1.0}, "id": "ACHBS", "gene_reaction_rule": "(ECD_03554 and ECD_03555) or (ECD_00079 and ECD_00080)"}, {"subsystem": "Pyruvate Metabolism", "name": "Acetate kinase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACKr"]}, "metabolites": {"ac_c": -1.0, "actp_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "ACKr", "gene_reaction_rule": "ECD_02982 or ECD_02221 or ECD_01820"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Acetolactate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACLS"]}, "metabolites": {"pyr_c": -2.0, "co2_c": 1.0, "h_c": -1.0, "alac__S_c": 1.0}, "id": "ACLS", "gene_reaction_rule": "(ECD_03554 and ECD_03555) or (ECD_00079 and ECD_00080)"}, {"subsystem": "Alternate Carbon Metabolism", "name": "N-acetylmuramate 6-phosphate hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACM6PH"]}, "metabolites": {"lac__D_c": 1.0, "h2o_c": -1.0, "acgam6p_c": 1.0, "acmum6p_c": -1.0}, "id": "ACM6PH", "gene_reaction_rule": "ECD_02328"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "UDP-N-acetyl-D-mannosaminuronic acid transferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACMAMUT"]}, "metabolites": {"udp_c": 1.0, "unagamu_c": 1.0, "h_c": 1.0, "uacmamu_c": -1.0, "unaga_c": -1.0}, "id": "ACMAMUT", "gene_reaction_rule": "ECD_03673"}, {"subsystem": "Transport, Inner Membrane", "name": "N-acetyl-D-mannosamine transport via PTS  (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACMANAptspp"]}, "metabolites": {"acmana_p": -1.0, "pep_c": -1.0, "pyr_c": 1.0, "acmanap_c": 1.0}, "id": "ACMANAptspp", "gene_reaction_rule": "ECD_01787 and ECD_01788 and ECD_01789 and ECD_02315 and ECD_02316"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "N-acetyl-D-mannosamine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACMANAtex"]}, "metabolites": {"acmana_p": 1.0, "acmana_e": -1.0}, "id": "ACMANAtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "N-acetylmuramate transport via PEP:Pyr PTS (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACMUMptspp"]}, "metabolites": {"pep_c": -1.0, "acmum6p_c": 1.0, "pyr_c": 1.0, "acmum_p": -1.0}, "id": "ACMUMptspp", "gene_reaction_rule": "ECD_02317 and ECD_02329 and ECD_02315 and ECD_02316"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "N-acetylmuramate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACMUMtex"]}, "metabolites": {"acmum_e": -1.0, "acmum_p": 1.0}, "id": "ACMUMtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "N-acetylneuraminate proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACNAMt2pp"]}, "metabolites": {"acnam_p": -1.0, "acnam_c": 1.0, "h_p": -1.0, "h_c": 1.0}, "id": "ACNAMt2pp", "gene_reaction_rule": "ECD_03084"}, {"subsystem": "Transport, Outer Membrane", "name": "N-acetylneuraminate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACNAMtex"]}, "metabolites": {"acnam_e": -1.0, "acnam_p": 1.0}, "id": "ACNAMtex", "gene_reaction_rule": "ECD_04178 or ECD_00933 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "N-Acetylneuraminate lyase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACNML"]}, "metabolites": {"pyr_c": 1.0, "acmana_c": 1.0, "acnam_c": -1.0}, "id": "ACNML", "gene_reaction_rule": "ECD_03085"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (butanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD1f"]}, "metabolites": {"btcoa_c": -1.0, "fadh2_c": 1.0, "b2coa_c": 1.0, "fad_c": -1.0}, "id": "ACOAD1f", "gene_reaction_rule": "ECD_00216"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (hexanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD2f"]}, "metabolites": {"fadh2_c": 1.0, "hxcoa_c": -1.0, "fad_c": -1.0, "hx2coa_c": 1.0}, "id": "ACOAD2f", "gene_reaction_rule": "ECD_00216"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (octanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD3f"]}, "metabolites": {"oc2coa_c": 1.0, "fadh2_c": 1.0, "occoa_c": -1.0, "fad_c": -1.0}, "id": "ACOAD3f", "gene_reaction_rule": "ECD_00216"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (decanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD4f"]}, "metabolites": {"fadh2_c": 1.0, "dc2coa_c": 1.0, "dcacoa_c": -1.0, "fad_c": -1.0}, "id": "ACOAD4f", "gene_reaction_rule": "ECD_00216"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (dodecanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD5f"]}, "metabolites": {"ddcacoa_c": -1.0, "fadh2_c": 1.0, "fad_c": -1.0, "dd2coa_c": 1.0}, "id": "ACOAD5f", "gene_reaction_rule": "ECD_00216"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (tetradecanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD6f"]}, "metabolites": {"fadh2_c": 1.0, "tdcoa_c": -1.0, "fad_c": -1.0, "td2coa_c": 1.0}, "id": "ACOAD6f", "gene_reaction_rule": "ECD_00216"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (hexadecanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD7f"]}, "metabolites": {"pmtcoa_c": -1.0, "fadh2_c": 1.0, "hdd2coa_c": 1.0, "fad_c": -1.0}, "id": "ACOAD7f", "gene_reaction_rule": "ECD_00216"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (octadecanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD8f"]}, "metabolites": {"stcoa_c": -1.0, "od2coa_c": 1.0, "fadh2_c": 1.0, "fad_c": -1.0}, "id": "ACOAD8f", "gene_reaction_rule": "ECD_00216"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acetyl-CoA ACP transacylase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOATA"]}, 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tetrapeptide transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGM4Pt2pp"]}, "metabolites": {"anhgm4p_c": 1.0, "h_c": 1.0, "h_p": -1.0, "anhgm4p_p": -1.0}, "id": "AGM4Pt2pp", "gene_reaction_rule": "ECD_00384"}, {"subsystem": "Murein Recycling", "name": "N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl beta -1,4-N-acetylglucosaminidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGMH"]}, "metabolites": {"acgam_c": 1.0, "anhm_c": 1.0, "h2o_c": -1.0, "anhgm_c": -1.0}, "id": "AGMH", "gene_reaction_rule": "ECD_01103"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "ADP-D-glycero-D-manno-heptose epimerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGMHE"]}, "metabolites": {"adphep_DD_c": -1.0, "adphep_LD_c": 1.0}, "id": "AGMHE", "gene_reaction_rule": "ECD_03476"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Agmatinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGMT"]}, "metabolites": {"ptrc_c": 1.0, "agm_c": -1.0, "urea_c": 1.0, "h2o_c": -1.0}, "id": "AGMT", "gene_reaction_rule": "ECD_02767"}, {"subsystem": "Murein Recycling", "name": "GlcNAc-anhMurNAc transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGMt2pp"]}, "metabolites": {"anhgm_c": 1.0, "anhgm_p": -1.0, "h_p": -1.0, "h_c": 1.0}, "id": "AGMt2pp", "gene_reaction_rule": "ECD_00384"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Agmatine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AGMtex"]}, "metabolites": {"agm_p": 1.0, "agm_e": -1.0}, "id": "AGMtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "1-tetradecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGPAT120"]}, "metabolites": {"1ddecg3p_c": -1.0, "ACP_c": 1.0, "pa120_c": 1.0, "ddcaACP_c": -1.0}, "id": "AGPAT120", "gene_reaction_rule": "ECD_02890"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "1-tetradecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGPAT140"]}, "metabolites": {"1tdecg3p_c": -1.0, "pa140_c": 1.0, "ACP_c": 1.0, "myrsACP_c": -1.0}, "id": "AGPAT140", "gene_reaction_rule": "ECD_02890"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "1-tetradec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGPAT141"]}, "metabolites": {"tdeACP_c": -1.0, "pa141_c": 1.0, "ACP_c": 1.0, "1tdec7eg3p_c": -1.0}, "id": "AGPAT141", "gene_reaction_rule": "ECD_02890"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "1-hexadecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGPAT160"]}, "metabolites": {"pa160_c": 1.0, "ACP_c": 1.0, "1hdecg3p_c": -1.0, "palmACP_c": -1.0}, "id": "AGPAT160", "gene_reaction_rule": "ECD_02890"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "1-hexadec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGPAT161"]}, "metabolites": {"pa161_c": 1.0, "1hdec9eg3p_c": -1.0, "ACP_c": 1.0, "hdeACP_c": -1.0}, "id": "AGPAT161", "gene_reaction_rule": "ECD_02890"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "1-octadecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGPAT180"]}, "metabolites": {"ocdcaACP_c": -1.0, "ACP_c": 1.0, "1odecg3p_c": -1.0, "pa180_c": 1.0}, "id": "AGPAT180", "gene_reaction_rule": "ECD_02890"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "1-octadec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGPAT181"]}, "metabolites": {"1odec11eg3p_c": -1.0, "octeACP_c": -1.0, "ACP_c": 1.0, "pa181_c": 1.0}, "id": "AGPAT181", "gene_reaction_rule": "ECD_02890"}, {"subsystem": "Arginine and Proline Metabolism", "name": "N-acetyl-g-glutamyl-phosphate reductase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AGPR"]}, "metabolites": {"nadp_c": -1.0, "nadph_c": 1.0, "acg5p_c": 1.0, "acg5sa_c": -1.0, "h_c": 1.0, "pi_c": -1.0}, "id": "AGPR", "gene_reaction_rule": "ECD_03843"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Silver transport out via proton antiport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGt3"]}, "metabolites": {"ag_e": 1.0, "h_e": -1.0, "h_c": 1.0, "ag_c": -1.0}, "id": "AGt3", "gene_reaction_rule": "ECD_00533 and ECD_00534 and ECD_00535 and ECD_00536"}, {"subsystem": "Methionine Metabolism", "name": "S-adenosylhomocysteine nucleosidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AHCYSNS"]}, "metabolites": {"ade_c": 1.0, "h2o_c": -1.0, "ahcys_c": -1.0, "rhcys_c": 1.0}, "id": "AHCYSNS", "gene_reaction_rule": "ECD_00158"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Phosphoribosylaminoimidazolecarboxamide formyltransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AICART"]}, "metabolites": {"aicar_c": -1.0, "fprica_c": 1.0, "10fthf_c": -1.0, "thf_c": 1.0}, "id": "AICART", "gene_reaction_rule": "ECD_03883"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Phosphoribosylaminoimidazole carboxylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AIRC2"]}, "metabolites": {"5caiz_c": 1.0, "atp_c": -1.0, "hco3_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "air_c": -1.0, "pi_c": 1.0}, "id": "AIRC2", "gene_reaction_rule": "ECD_00472"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Phosphoribosylaminoimidazole carboxylase (mutase rxn)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AIRC3"]}, "metabolites": {"5caiz_c": 1.0, "5aizc_c": -1.0}, "id": "AIRC3", "gene_reaction_rule": "ECD_00473"}, {"subsystem": "Citric Acid Cycle", "name": "2-Oxogluterate dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AKGDH"]}, "metabolites": {"akg_c": -1.0, "nadh_c": 1.0, "succoa_c": 1.0, "coa_c": -1.0, "nad_c": -1.0, "co2_c": 1.0}, "id": "AKGDH", "gene_reaction_rule": "ECD_00115 and ECD_00685 and ECD_00686"}, {"subsystem": "Transport, Inner Membrane", "name": "2-oxoglutarate reversible transport via symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AKGt2rpp"]}, "metabolites": {"akg_c": 1.0, "akg_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "AKGt2rpp", "gene_reaction_rule": "ECD_02481"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Alpha-ketoglutarate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AKGtex"]}, "metabolites": {"akg_p": 1.0, "akg_e": -1.0}, "id": "AKGtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Murein Recycling", "name": "D-alanine-D-alanine dipeptidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALAALAD"]}, "metabolites": {"h2o_c": -1.0, "ala__D_c": 2.0, "alaala_c": -1.0}, "id": "ALAALAD", "gene_reaction_rule": "ECD_01446"}, {"subsystem": "Transport, Inner Membrane", "name": "D-alanyl-D-alanine (DalaDala) transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALAALAabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "alaala_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "alaala_c": 1.0}, "id": "ALAALAabcpp", "gene_reaction_rule": "(ECD_01445 and ECD_01444 and ECD_01443 and ECD_01442 and ECD_01441) or (ECD_03395 and ECD_03394 and ECD_03393 and ECD_03392 and ECD_03391)"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "D-alanine-D-alanine ligase (reversible)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALAALAr"]}, "metabolites": {"atp_c": -1.0, "ala__D_c": -2.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "alaala_c": 1.0}, "id": "ALAALAr", "gene_reaction_rule": "ECD_00328 or ECD_00093"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-alanyl-D-alanine (DalaDala) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALAALAtex"]}, "metabolites": {"alaala_e": -1.0, "alaala_p": 1.0}, "id": "ALAALAtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Murein Recycling", "name": "L-alanyl-gamma-glutamate epimerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALAGLUE"]}, "metabolites": {"LalaDglu_c": -1.0, "LalaLglu_c": 1.0}, "id": "ALAGLUE", "gene_reaction_rule": "ECD_01302"}, {"subsystem": "Alanine and Aspartate Metabolism", "name": "Alanine racemase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALAR"]}, "metabolites": {"ala__D_c": 1.0, "ala__L_c": -1.0}, "id": "ALAR", "gene_reaction_rule": "ECD_01165 or ECD_03925"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "D-alanine transaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALATA_D2"]}, "metabolites": {"pydx5p_c": -1.0, "pyr_c": 1.0, "ala__D_c": -1.0, "pyam5p_c": 1.0}, "id": "ALATA_D2", "gene_reaction_rule": "ECD_02443 or ECD_00875"}, {"subsystem": "Alanine and Aspartate Metabolism", "name": "L-alanine transaminase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALATA_L"]}, "metabolites": {"akg_c": -1.0, "pyr_c": 1.0, "ala__L_c": -1.0, "glu__L_c": 1.0}, "id": "ALATA_L", "gene_reaction_rule": "ECD_02215 or ECD_02289"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Alanine transaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALATA_L2"]}, "metabolites": {"pydx5p_c": -1.0, "pyr_c": 1.0, "ala__L_c": -1.0, "pyam5p_c": 1.0}, "id": "ALATA_L2", "gene_reaction_rule": "ECD_00875 or ECD_02443"}, {"subsystem": "tRNA Charging", "name": "Alanyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALATRS"]}, "metabolites": {"trnaala_c": -1.0, "atp_c": -1.0, "ppi_c": 1.0, "ala__L_c": -1.0, "amp_c": 1.0, "alatrna_c": 1.0}, "id": "ALATRS", "gene_reaction_rule": "ECD_02547"}, {"subsystem": "Transport, Inner Membrane", "name": "L-alanine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALAabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "ala__L_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "ala__L_p": -1.0}, "id": "ALAabcpp", "gene_reaction_rule": "ECD_03303 and ECD_03304 and ECD_03306 and ECD_03309 and ECD_03305"}, {"subsystem": "Transport, Inner Membrane", "name": "L-alanine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALAt2pp", "ALAt2rpp"]}, "metabolites": {"ala__L_c": 1.0, "h_c": 1.0, "h_p": -1.0, "ala__L_p": -1.0}, "id": "ALAt2pp_copy1", "gene_reaction_rule": "ECD_04080"}, {"subsystem": "Transport, Inner Membrane", "name": "L-alanine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALAt2pp", "ALAt2rpp"]}, "metabolites": {"ala__L_c": 1.0, "h_c": 1.0, "h_p": -1.0, "ala__L_p": -1.0}, "id": "ALAt2pp_copy2", "gene_reaction_rule": ""}, {"subsystem": "Transport, Inner Membrane", "name": "L-alanine transport in via sodium symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALAt4pp"]}, "metabolites": {"na1_p": -1.0, "na1_c": 1.0, "ala__L_c": 1.0, "ala__L_p": -1.0}, "id": "ALAt4pp", "gene_reaction_rule": "ECD_00007"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-alanine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALAtex"]}, "metabolites": {"ala__L_e": -1.0, "ala__L_p": 1.0}, "id": "ALAtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Alcohol dehydrogenase (glycerol)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALCD19"]}, "metabolites": {"glyald_c": -1.0, "nadh_c": -1.0, "glyc_c": 1.0, "nad_c": 1.0, "h_c": -1.0}, "id": "ALCD19", "gene_reaction_rule": "ECD_00310"}, {"subsystem": "Pyruvate Metabolism", "name": "Alcohol dehydrogenase (ethanol)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALCD2x"]}, "metabolites": {"acald_c": 1.0, "nadh_c": 1.0, "etoh_c": -1.0, "nad_c": -1.0, "h_c": 1.0}, "id": "ALCD2x", "gene_reaction_rule": "ECD_01436 or ECD_01215 or ECD_00310"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Aldehyde dehydrogenase (phenylacetaldehyde, NAD)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALDD19xr"]}, "metabolites": {"h2o_c": -1.0, "pac_c": 1.0, "h_c": 2.0, "nad_c": -1.0, "pacald_c": -1.0, "nadh_c": 1.0}, "id": "ALDD19xr", "gene_reaction_rule": "ECD_01357"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Aldehyde dehydrogenase (acetaldehyde, NAD)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALDD2x"]}, "metabolites": {"h2o_c": -1.0, "acald_c": -1.0, "h_c": 2.0, "nad_c": -1.0, "ac_c": 1.0, "nadh_c": 1.0}, "id": "ALDD2x", "gene_reaction_rule": "ECD_01277"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Aldehyde dehydrogenase (acetaldehyde, NADP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALDD2y"]}, "metabolites": {"h2o_c": -1.0, "nadp_c": -1.0, "nadph_c": 1.0, "acald_c": -1.0, "h_c": 2.0, "ac_c": 1.0}, "id": "ALDD2y", "gene_reaction_rule": "ECD_03443"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Aldehyde dehydrogenase (propanal, NADP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALDD3y"]}, "metabolites": {"h2o_c": -1.0, "nadp_c": -1.0, "nadph_c": 1.0, "ppa_c": 1.0, "ppal_c": -1.0, "h_c": 2.0}, "id": "ALDD3y", "gene_reaction_rule": "ECD_03443"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Aldehyde dehydrogenase (butanal, NAD)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALDD4"]}, "metabolites": {"h2o_c": -1.0, "btal_c": -1.0, "but_c": 1.0, "h_c": 2.0, "nad_c": -1.0, "nadh_c": 1.0}, "id": "ALDD4", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "Allose kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALLK"]}, "metabolites": {"all6p_c": 1.0, "all__D_c": -1.0, "adp_c": 1.0, "atp_c": -1.0, "h_c": 1.0}, "id": "ALLK", "gene_reaction_rule": "ECD_03956"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Allose 6-phosphate isomerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALLPI"]}, "metabolites": {"all6p_c": -1.0, "allul6p_c": 1.0}, "id": "ALLPI", "gene_reaction_rule": "ECD_03962"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Allantoate amidohydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALLTAMH"]}, "metabolites": {"alltt_c": -1.0, "urdglyc_c": 1.0, "h2o_c": -2.0, "h_c": -2.0, "co2_c": 1.0, "nh4_c": 2.0}, "id": "ALLTAMH", "gene_reaction_rule": "ECD_00466"}, {"subsystem": "Nitrogen Metabolism", "name": "Allantoinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALLTN"]}, "metabolites": {"alltt_c": 1.0, "h2o_c": -1.0, "h_c": 1.0, "alltn_c": -1.0}, "id": "ALLTN", "gene_reaction_rule": "ECD_00462"}, {"subsystem": "Transport, Inner Membrane", "name": "Allantoin transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALLTNt2rpp"]}, "metabolites": {"alltn_c": 1.0, "h_c": 1.0, "h_p": -1.0, "alltn_p": -1.0}, "id": "ALLTNt2rpp", "gene_reaction_rule": "ECD_00461"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Allantoin transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALLTNtex"]}, "metabolites": {"alltn_e": -1.0, "alltn_p": 1.0}, "id": "ALLTNtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Allulose 6-phosphate epimerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALLULPE"]}, "metabolites": {"allul6p_c": -1.0, "f6p_c": 1.0}, "id": "ALLULPE", "gene_reaction_rule": "ECD_03957"}, {"subsystem": "Transport, Inner Membrane", "name": "D-allose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALLabcpp"]}, "metabolites": {"h2o_c": -1.0, "pi_c": 1.0, "atp_c": -1.0, "all__D_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "all__D_c": 1.0}, "id": "ALLabcpp", "gene_reaction_rule": "ECD_03959 and ECD_03960 and ECD_03958"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Allose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALLtex"]}, "metabolites": {"all__D_p": 1.0, "all__D_e": -1.0}, "id": "ALLtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Unassigned", "name": "Apolipoprotein N-acyltransferase (phosphatidylethanolamine, periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALPATE160pp"]}, "metabolites": {"alpp_p": -1.0, "lpp_p": 1.0, "2agpe160_p": 1.0, "pe160_p": -1.0}, "id": "ALPATE160pp", "gene_reaction_rule": "ECD_00625 and ECD_01646"}, {"subsystem": "Unassigned", "name": "Apolipoprotein N-acyltransferase (phosphatidylglycerol, periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALPATG160pp"]}, "metabolites": {"alpp_p": -1.0, "pg160_p": -1.0, "2agpg160_p": 1.0, "lpp_p": 1.0}, "id": "ALPATG160pp", "gene_reaction_rule": "ECD_00625 and ECD_01646"}, {"subsystem": "Methylglyoxal Metabolism", "name": "Aldose reductase (methylglyoxal)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALR2"]}, "metabolites": {"acetol_c": 1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0, "mthgxl_c": -1.0}, "id": "ALR2", "gene_reaction_rule": "ECD_02885 or ECD_00200 or ECD_01750 or ECD_02876"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Aldose reductase (acetol)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALR4x"]}, "metabolites": {"nadh_c": -1.0, "acetol_c": -1.0, "12ppd__R_c": 1.0, "nad_c": 1.0, "h_c": -1.0}, "id": "ALR4x", "gene_reaction_rule": "ECD_03831"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Altronate hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALTRH"]}, "metabolites": {"h2o_c": 1.0, "2ddglcn_c": 1.0, "altrn_c": -1.0}, "id": "ALTRH", "gene_reaction_rule": "ECD_02960"}, {"subsystem": "Murein Recycling", "name": "Anhydrous-N-Acetylmuramyl-tripeptide amidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AM3PA"]}, "metabolites": {"anhm_c": 1.0, "h2o_c": -1.0, "LalaDgluMdap_c": 1.0, "anhm3p_c": -1.0}, "id": "AM3PA", "gene_reaction_rule": "ECD_00109"}, {"subsystem": "Murein Recycling", "name": "Anhydrous-N-Acetylmuramyl-tetrapeptide amidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AM4PA"]}, "metabolites": {"anhm_c": 1.0, "anhm4p_c": -1.0, "h2o_c": -1.0, "LalaDgluMdapDala_c": 1.0}, "id": "AM4PA", "gene_reaction_rule": "ECD_00109"}, {"subsystem": "Murein Recycling", "name": "Anhydrous-N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AM4PCP"]}, "metabolites": {"h2o_c": -1.0, "ala__D_c": 1.0, "anhm4p_c": -1.0, "anhm3p_c": 1.0}, "id": "AM4PCP", "gene_reaction_rule": "ECD_01167"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Amylomaltase (maltotriose)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AMALT1"]}, "metabolites": {"glc__D_c": 1.0, "malt_c": -1.0, "malttr_c": -1.0, "maltttr_c": 1.0}, "id": "AMALT1", "gene_reaction_rule": "ECD_03268"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Amylomaltase (maltotetraose)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AMALT2"]}, "metabolites": {"maltpt_c": 1.0, "glc__D_c": 1.0, "malt_c": -1.0, "maltttr_c": -1.0}, "id": "AMALT2", "gene_reaction_rule": "ECD_03268"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Amylomaltase (maltopentaose)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AMALT3"]}, "metabolites": {"maltpt_c": -1.0, "glc__D_c": 1.0, "malt_c": -1.0, "malthx_c": 1.0}, "id": "AMALT3", "gene_reaction_rule": "ECD_03268"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Amylomaltase (maltohexaose)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AMALT4"]}, "metabolites": {"glc__D_c": 1.0, "malthx_c": -1.0, "malt_c": -1.0, "malthp_c": 1.0}, "id": "AMALT4", "gene_reaction_rule": "ECD_03268"}, {"subsystem": "Alternate Carbon Metabolism", "name": "N-acetylmannosamine 6-phosphate epimerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AMANAPEr"]}, "metabolites": {"acmanap_c": -1.0, "acgam6p_c": 1.0}, "id": "AMANAPEr", "gene_reaction_rule": "ECD_03083"}, {"subsystem": "Alternate Carbon Metabolism", "name": "N-acetyl-D-mannosamine kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AMANK"]}, "metabolites": {"acmana_c": -1.0, "acmanap_c": 1.0, "adp_c": 1.0, "atp_c": -1.0, "h_c": 1.0}, "id": "AMANK", "gene_reaction_rule": "ECD_03082"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Adenosylmethionine-8-amino-7-oxononanoate transaminase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AMAOTr"]}, "metabolites": {"amet_c": -1.0, "amob_c": 1.0, "dann_c": 1.0, "8aonn_c": -1.0}, "id": "AMAOTr", "gene_reaction_rule": "ECD_00741"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "S-adenosylmethione:2-demthylmenaquinole methyltransferase (menaquinone 8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AMMQLT8"]}, "metabolites": {"amet_c": -1.0, "ahcys_c": 1.0, "2dmmql8_c": -1.0, "h_c": 1.0, "mql8_c": 1.0}, "id": "AMMQLT8", "gene_reaction_rule": "ECD_03726"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "4-amino-2-methyl-5-phosphomethylpyrimidine synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AMPMS2"]}, "metabolites": {"h2o_c": -1.0, "nad_c": -1.0, "4ampm_c": 1.0, "h_c": 3.0, "for_c": 2.0, "air_c": -1.0, "nadh_c": 1.0}, "id": "AMPMS2", "gene_reaction_rule": "ECD_03871"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "AMP nucleosidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AMPN"]}, "metabolites": {"h2o_c": -1.0, "ade_c": 1.0, "r5p_c": 1.0, "amp_c": -1.0}, "id": "AMPN", "gene_reaction_rule": "ECD_01894"}, {"subsystem": "Cysteine Metabolism", "name": "Alanyl aminopeptidase (cys-gly)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AMPTASECG"]}, "metabolites": {"cys__L_c": 1.0, "h2o_c": -1.0, "gly_c": 1.0, "cgly_c": -1.0}, "id": "AMPTASECG", "gene_reaction_rule": "ECD_00232 or ECD_00936 or ECD_04126 or ECD_02415"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Aminopeptidase (pro-gly)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AMPTASEPG"]}, "metabolites": {"h2o_c": -1.0, "pro__L_c": 1.0, "gly_c": 1.0, "progly_c": -1.0}, "id": "AMPTASEPG", "gene_reaction_rule": "ECD_04126 or ECD_00232 or ECD_02415 or ECD_00936"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "AMP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AMPtex"]}, "metabolites": {"amp_e": -1.0, "amp_p": 1.0}, "id": "AMPtex", "gene_reaction_rule": "ECD_02142 or ECD_00933 or ECD_01348 or ECD_00238"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "GlcNAc-anhMurNAc transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ANHGMtex"]}, "metabolites": {"anhgm_e": -1.0, "anhgm_p": 1.0}, "id": "ANHGMtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Murein Recycling", "name": "1,6-anhydrous-N-Acetylmuramate kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ANHMK"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "anhm_c": -1.0, "acmum6p_c": 1.0}, "id": "ANHMK", "gene_reaction_rule": "ECD_01610"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Anthranilate phosphoribosyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ANPRT"]}, "metabolites": {"anth_c": -1.0, "ppi_c": 1.0, "prpp_c": -1.0, "pran_c": 1.0}, "id": "ANPRT", "gene_reaction_rule": "ECD_01237"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Anthranilate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ANS"]}, "metabolites": {"anth_c": 1.0, "pyr_c": 1.0, "chor_c": -1.0, "h_c": 1.0, "glu__L_c": 1.0, "gln__L_c": -1.0}, "id": "ANS", "gene_reaction_rule": "ECD_01237 and ECD_01238"}, {"subsystem": "Threonine and Lysine Metabolism", "name": "L-2-amino-3-oxobutanoate decarboxylation (spontaneous)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AOBUTDs"]}, "metabolites": {"h_c": -1.0, "co2_c": 1.0, "2aobut_c": -1.0, "aact_c": 1.0}, "id": "AOBUTDs", "gene_reaction_rule": "s0001"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "8-amino-7-oxononanoate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AOXSr2"]}, "metabolites": {"pimACP_c": -1.0, "co2_c": 1.0, "ala__L_c": -1.0, "ACP_c": 1.0, "8aonn_c": 1.0}, "id": "AOXSr2", "gene_reaction_rule": "ECD_00743"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Ap4A hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AP4AH"]}, "metabolites": {"ap4a_c": -1.0, "h_c": 2.0, "h2o_c": -1.0, "adp_c": 2.0}, "id": "AP4AH", "gene_reaction_rule": "ECD_00053"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Ap4A synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AP4AS"]}, "metabolites": {"ap4a_c": 1.0, "ppi_c": 1.0, "atp_c": -2.0, "h_c": -1.0}, "id": "AP4AS", "gene_reaction_rule": "ECD_04000"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Ap5A hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AP5AH"]}, "metabolites": {"ap5a_c": -1.0, "h2o_c": -1.0, "h_c": 2.0, "atp_c": 1.0, "adp_c": 1.0}, "id": "AP5AH", "gene_reaction_rule": "ECD_00053"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Aminopropylcadaverine synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APCS"]}, "metabolites": {"15dap_c": -1.0, "ametam_c": -1.0, "5mta_c": 1.0, "h_c": 1.0, "na15dap_c": 1.0}, "id": "APCS", "gene_reaction_rule": "ECD_00120"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acyl-phosphate:glycerol-3-phosphate acyltransferase (C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APG3PAT120"]}, "metabolites": {"ddcap_c": -1.0, "glyc3p_c": -1.0, "pi_c": 1.0, "h_c": 1.0, "1ddecg3p_c": 1.0}, "id": "APG3PAT120", "gene_reaction_rule": "ECD_02929"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acyl-phosphate:glycerol-3-phosphate acyltransferase (C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APG3PAT140"]}, "metabolites": {"1tdecg3p_c": 1.0, "glyc3p_c": -1.0, "pi_c": 1.0, "h_c": 1.0, "ttdcap_c": -1.0}, "id": "APG3PAT140", "gene_reaction_rule": "ECD_02929"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acyl-phosphate:glycerol-3-phosphate acyltransferase (C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APG3PAT141"]}, "metabolites": {"ttdceap_c": -1.0, "glyc3p_c": -1.0, "pi_c": 1.0, "h_c": 1.0, "1tdec7eg3p_c": 1.0}, "id": "APG3PAT141", "gene_reaction_rule": "ECD_02929"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acyl-phosphate:glycerol-3-phosphate acyltransferase (C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APG3PAT160"]}, "metabolites": {"1hdecg3p_c": 1.0, "glyc3p_c": -1.0, "pi_c": 1.0, "hdcap_c": -1.0, "h_c": 1.0}, "id": "APG3PAT160", "gene_reaction_rule": "ECD_02929"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acyl-phosphate:glycerol-3-phosphate acyltransferase (C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APG3PAT161"]}, "metabolites": {"1hdec9eg3p_c": 1.0, "glyc3p_c": -1.0, "pi_c": 1.0, "h_c": 1.0, "hdceap_c": -1.0}, "id": "APG3PAT161", "gene_reaction_rule": "ECD_02929"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acyl-phosphate:glycerol-3-phosphate acyltransferase (C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APG3PAT180"]}, "metabolites": {"glyc3p_c": -1.0, "pi_c": 1.0, "ocdcap_c": -1.0, "h_c": 1.0, "1odecg3p_c": 1.0}, "id": "APG3PAT180", "gene_reaction_rule": "ECD_02929"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acyl-phosphate:glycerol-3-phosphate acyltransferase (C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APG3PAT181"]}, "metabolites": {"1odec11eg3p_c": 1.0, "glyc3p_c": -1.0, "pi_c": 1.0, "h_c": 1.0, "ocdceap_c": -1.0}, "id": "APG3PAT181", "gene_reaction_rule": "ECD_02929"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acylphosphatase (C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APH120"]}, "metabolites": {"ddca_c": 1.0, "ddcap_c": -1.0, "h2o_c": -1.0, 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"Threonine and Lysine Metabolism", "name": "Aminopropanol dehydrogenase reversible", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["APPLDHr"]}, "metabolites": {"appl_c": 1.0, "nadh_c": -1.0, "h_c": -1.0, "nad_c": 1.0, "aact_c": -1.0}, "id": "APPLDHr", "gene_reaction_rule": "ECD_03831"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "5-amino-6-(5-phosphoribosylamino)uracil reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APRAUR"]}, "metabolites": {"5apru_c": -1.0, "nadp_c": 1.0, "nadph_c": -1.0, "5aprbu_c": 1.0, "h_c": -1.0}, "id": "APRAUR", "gene_reaction_rule": "ECD_00362"}, {"subsystem": "Alternate Carbon Metabolism", "name": "L-arabinose isomerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ARAI"]}, "metabolites": {"rbl__L_c": 1.0, "arab__L_c": -1.0}, "id": "ARAI", "gene_reaction_rule": "ECD_00064"}, {"subsystem": "Inorganic Ion Transport and 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"name": "Aerobactin transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ARBTNabcpp"]}, "metabolites": {"h2o_c": -1.0, "arbtn_fe3_c": 1.0, "atp_c": -1.0, "arbtn_fe3_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "ARBTNabcpp", "gene_reaction_rule": "ECD_00152 and ECD_00150 and ECD_00151"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Aerobactin Fe-loading reaction (spontaneous)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ARBTNexs"]}, "metabolites": {"arbtn_e": -1.0, "arbtn_fe3_e": 1.0, "fe3_e": -1.0}, "id": "ARBTNexs", "gene_reaction_rule": "s0001"}, {"subsystem": "Transport, Outer Membrane", "name": "Aerobactin secretion (to extracellular)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ARBTNtex"]}, "metabolites": {"arbtn_e": 1.0, "h_c": 1.0, "h_p": -1.0, "arbtn_p": -1.0}, "id": "ARBTNtex", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane", "name": "Aerobactin transport via ton system (extracellular)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ARBTNtonex"]}, "metabolites": {"arbtn_fe3_p": 1.0, "arbtn_fe3_e": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "ARBTNtonex", "gene_reaction_rule": ""}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Aerobactin secretion (to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ARBTNtpp"]}, "metabolites": {"h_p": -1.0, "h_c": 1.0, "arbtn_c": -1.0, "arbtn_p": 1.0}, "id": "ARBTNtpp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Inner Membrane", "name": "Arbutin transport via PEP:Pyr PTS (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ARBTptspp"]}, "metabolites": {"arbt_p": -1.0, "pep_c": -1.0, "pyr_c": 1.0, "arbt6p_c": 1.0}, "id": "ARBTptspp", "gene_reaction_rule": "(ECD_03606 and ECD_02315 and ECD_02316) or (ECD_02565 and 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-1.0, "h_c": 1.0, "arab__L_p": -1.0, "arab__L_c": 1.0}, "id": "ARBt2rpp", "gene_reaction_rule": "ECD_02689"}, {"subsystem": "Transport, Inner Membrane", "name": "L-arabinose transport via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ARBt3ipp"]}, "metabolites": {"arab__L_p": 1.0, "arab__L_c": -1.0, "h_p": -1.0, "h_c": 1.0}, "id": "ARBt3ipp", "gene_reaction_rule": "ECD_01485"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-arabinose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ARBtex"]}, "metabolites": {"arab__L_e": -1.0, "arab__L_p": 1.0}, "id": "ARBtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Arginine/agmatine antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ARGAGMt7pp"]}, 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"ECD_03376"}, {"subsystem": "Transport, Inner Membrane", "name": "L-asparate transport via proton symport (3 H) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ASPt2_3pp"]}, "metabolites": {"asp__L_c": 1.0, "asp__L_p": -1.0, "h_c": 3.0, "h_p": -3.0}, "id": "ASPt2_3pp", "gene_reaction_rule": "ECD_04008 or ECD_03994"}, {"subsystem": "Transport, Inner Membrane", "name": "L-aspartate transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ASPt2pp", "ASPt2rpp"]}, "metabolites": {"asp__L_c": 1.0, "asp__L_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "ASPt2pp_copy1", "gene_reaction_rule": "ECD_03949"}, {"subsystem": "Transport, Inner Membrane", "name": "L-aspartate transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ASPt2pp", "ASPt2rpp"]}, "metabolites": {"asp__L_c": 1.0, "asp__L_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "ASPt2pp_copy2", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-aspartate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ASPtex"]}, "metabolites": {"asp__L_p": 1.0, "asp__L_e": -1.0}, "id": "ASPtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Arsenate reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ASR"]}, "metabolites": {"aso4_c": -1.0, "aso3_c": 1.0, "gthrd_c": -2.0, "h2o_c": 1.0, "gthox_c": 1.0}, "id": "ASR", "gene_reaction_rule": "ECD_03352 and ECD_01060"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Arginine succinyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AST"]}, "metabolites": {"coa_c": 1.0, "succoa_c": -1.0, "sucarg_c": 1.0, "arg__L_c": -1.0, "h_c": 1.0}, "id": "AST", "gene_reaction_rule": "ECD_01716"}, {"subsystem": "Threonine and Lysine Metabolism", "name": "L-allo-threonine dehydrogenase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ATHRDHr"]}, "metabolites": {"nadp_c": -1.0, "nadph_c": 1.0, "h_c": 1.0, "athr__L_c": -1.0, "2aobut_c": 1.0}, "id": "ATHRDHr", "gene_reaction_rule": "ECD_01498"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "ATP amine hydrolysis (spontaneous)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ATPHs"]}, "metabolites": {"h2o_c": -1.0, "itp_c": 1.0, "nh4_c": 1.0, "atp_c": -1.0, "h_c": -1.0}, "id": "ATPHs", "gene_reaction_rule": "s0001"}, {"subsystem": "Unassigned", "name": "ATP maintenance requirement", "upper_bound": 1000.0, "lower_bound": 3.15, "notes": {"original_bigg_ids": ["ATPM"]}, "metabolites": {"h2o_c": -1.0, "pi_c": 1.0, "adp_c": 1.0, "atp_c": -1.0, "h_c": 1.0}, "id": "ATPM", "gene_reaction_rule": ""}, {"subsystem": "Histidine Metabolism", "name": "ATP phosphoribosyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ATPPRT"]}, "metabolites": {"ppi_c": 1.0, "prpp_c": -1.0, "atp_c": -1.0, "prbatp_c": 1.0}, "id": "ATPPRT", "gene_reaction_rule": "ECD_01921"}, {"subsystem": "Oxidative Phosphorylation", "name": "ATP synthase (four protons for one ATP) (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ATPS4rpp"]}, "metabolites": {"h2o_c": 1.0, "atp_c": 1.0, "h_p": -4.0, "h_c": 3.0, "adp_c": -1.0, "pi_c": -1.0}, "id": "ATPS4rpp", "gene_reaction_rule": "((ECD_03620 and ECD_03621 and ECD_03622) and (ECD_03615 and ECD_03616 and ECD_03617 and ECD_03618 and ECD_03619) and ECD_03623) or ((ECD_03620 and ECD_03621 and ECD_03622) and (ECD_03615 and ECD_03616 and ECD_03617 and ECD_03618 and ECD_03619))"}, {"subsystem": "Transport, Inner Membrane", "name": "Beta-alanine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["BALAt2pp"]}, "metabolites": {"ala_B_p": -1.0, "ala_B_c": 1.0, "h_p": -1.0, "h_c": 1.0}, "id": "BALAt2pp", "gene_reaction_rule": "ECD_04080"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Beta-alanine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["BALAtex"]}, "metabolites": {"ala_B_e": -1.0, "ala_B_p": 1.0}, "id": "BALAtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Unassigned", "name": "Betaine-aldehyde dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["BETALDHx"]}, "metabolites": {"h2o_c": -1.0, "glyb_c": 1.0, "betald_c": -1.0, "h_c": 2.0, "nad_c": -1.0, "nadh_c": 1.0}, "id": "BETALDHx", "gene_reaction_rule": "ECD_00268"}, {"subsystem": "Unassigned", "name": "Betaine-aldehyde dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, 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"Biotin transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["BTNtex"]}, "metabolites": {"btn_p": 1.0, "btn_e": -1.0}, "id": "BTNtex", "gene_reaction_rule": "ECD_02142 or ECD_01348 or ECD_00238 or ECD_00933"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Biotin synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["BTS5"]}, "metabolites": {"btn_c": 1.0, "dtbt_c": -1.0, "dad_5_c": 1.0, "2fe2s_c": -1.0, "h_c": 1.0, "met__L_c": 1.0, "2fe1s_c": 1.0, "amet_c": -1.0}, "id": "BTS5", "gene_reaction_rule": "ECD_00742"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Acetyl-CoA:butyrate-CoA transferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["BUTCT"]}, "metabolites": {"btcoa_c": 1.0, "ac_c": 1.0, "but_c": -1.0, "accoa_c": -1.0}, "id": "BUTCT", "gene_reaction_rule": "ECD_02148 and ECD_02149"}, {"subsystem": "Transport, 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["BUTt2rpp"]}, "metabolites": {"but_p": -1.0, "h_p": -1.0, "but_c": 1.0, "h_c": 1.0}, "id": "BUTt2rpp", "gene_reaction_rule": "ECD_02150"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Butyrate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["BUTtex"]}, "metabolites": {"but_e": -1.0, "but_p": 1.0}, "id": "BUTtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Tungsten bispterin guanine dinucleotide synthase (single GDP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["BWCOGDS1"]}, "metabolites": {"ppi_c": 1.0, "bwco_c": -1.0, "gtp_c": -1.0, "h_c": -1.0, "bwco1gdp_c": 1.0}, "id": "BWCOGDS1", "gene_reaction_rule": "ECD_03743 or (ECD_03743 and ECD_03742)"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Tungsten bispterin guanine dinucleotide 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or ECD_02707"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Carbamoyl-phosphate synthase (glutamine-hydrolysing)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CBPS"]}, "metabolites": {"cbp_c": 1.0, "atp_c": -2.0, "hco3_c": -1.0, "glu__L_c": 1.0, "h2o_c": -1.0, "h_c": 2.0, "adp_c": 2.0, "pi_c": 1.0, "gln__L_c": -1.0}, "id": "CBPS", "gene_reaction_rule": "ECD_00036 and ECD_00037"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "7-cyano-7-carbaguanine synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CCGS"]}, "metabolites": {"preq0_c": 1.0, "h2o_c": 1.0, "cdg_c": -1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "nh4_c": -1.0}, "id": "CCGS", "gene_reaction_rule": "ECD_00396"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Cadmium (Cd+2) ABC transporter (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CD2abcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "cd2_c": -1.0, "cd2_p": 1.0, "adp_c": 1.0, "pi_c": 1.0, "h_c": 1.0}, "id": "CD2abcpp", "gene_reaction_rule": "ECD_03318"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Cadmium (Cd+2) transport out via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CD2t3pp"]}, "metabolites": {"h_p": -1.0, "h_c": 1.0, "cd2_c": -1.0, "cd2_p": 1.0}, "id": "CD2t3pp", "gene_reaction_rule": "ECD_03800 or ECD_00705"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Cadmium (Cd+2) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CD2tex"]}, "metabolites": {"cd2_e": -1.0, "cd2_p": 1.0}, "id": "CD2tex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Cadmium (+2) transport in via permease (no H+)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CD2tpp"]}, "metabolites": {"cd2_p": -1.0, "cd2_c": 1.0}, "id": "CD2tpp", "gene_reaction_rule": "ECD_02912"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-Diacylglycerol pyrophostatase (n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDAPPA120"]}, "metabolites": {"h_c": 2.0, "cdpdddecg_c": -1.0, "h2o_c": -1.0, "pa120_c": 1.0, "cmp_c": 1.0}, "id": "CDAPPA120", "gene_reaction_rule": "ECD_03803"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-Diacylglycerol pyrophostatase (n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDAPPA140"]}, "metabolites": {"cdpdtdecg_c": -1.0, "h2o_c": -1.0, "pa140_c": 1.0, "h_c": 2.0, "cmp_c": 1.0}, "id": "CDAPPA140", "gene_reaction_rule": "ECD_03803"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-Diacylglycerol pyrophostatase (n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDAPPA141"]}, "metabolites": {"pa141_c": 1.0, "cmp_c": 1.0, "h_c": 2.0, "h2o_c": -1.0, "cdpdtdec7eg_c": -1.0}, "id": "CDAPPA141", "gene_reaction_rule": "ECD_03803"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-Diacylglycerol pyrophostatase (n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDAPPA160"]}, "metabolites": {"h_c": 2.0, "pa160_c": 1.0, "h2o_c": -1.0, "cdpdhdecg_c": -1.0, "cmp_c": 1.0}, "id": "CDAPPA160", "gene_reaction_rule": "ECD_03803"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-Diacylglycerol pyrophostatase (n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDAPPA161"]}, "metabolites": {"pa161_c": 1.0, "h2o_c": -1.0, "cmp_c": 1.0, "h_c": 2.0, "cdpdhdec9eg_c": -1.0}, "id": "CDAPPA161", "gene_reaction_rule": "ECD_03803"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-Diacylglycerol pyrophostatase (n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDAPPA180"]}, "metabolites": {"h_c": 2.0, "cdpdodecg_c": -1.0, "cmp_c": 1.0, "h2o_c": -1.0, "pa180_c": 1.0}, "id": "CDAPPA180", "gene_reaction_rule": "ECD_03803"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-Diacylglycerol pyrophostatase (n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDAPPA181"]}, "metabolites": {"h_c": 2.0, "h2o_c": -1.0, "pa181_c": 1.0, "cdpdodec11eg_c": -1.0, "cmp_c": 1.0}, "id": "CDAPPA181", "gene_reaction_rule": "ECD_03803"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "7-cyano-7-deazaguanine reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDGR"]}, "metabolites": {"preq1_c": 1.0, "preq0_c": -1.0, "nadp_c": 2.0, "nadph_c": -2.0, "h_c": -3.0}, "id": "CDGR", "gene_reaction_rule": "ECD_02639"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "7-deaza-7-carboxyguanine synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDGS"]}, "metabolites": {"h_c": -1.0, "cdg_c": 1.0, "cph4_c": -1.0, "nh4_c": 1.0}, "id": "CDGS", "gene_reaction_rule": ""}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDPMEK"]}, "metabolites": {"4c2me_c": -1.0, "2p4c2me_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "CDPMEK", "gene_reaction_rule": "ECD_01183"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cyclopropane fatty acid synthase (Phosphatidylethanolamine, n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CFAS160E"]}, "metabolites": {"amet_c": -2.0, "cpe160_c": 1.0, "pe161_c": -1.0, "h_c": 2.0, "ahcys_c": 2.0}, "id": "CFAS160E", "gene_reaction_rule": "ECD_01632"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cyclopropane fatty acid synthase (Phosphatidylglycerol, n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CFAS160G"]}, "metabolites": {"amet_c": -2.0, "pg161_c": -1.0, "ahcys_c": 2.0, "h_c": 2.0, "cpg160_c": 1.0}, "id": "CFAS160G", "gene_reaction_rule": "ECD_01632"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cyclopropane fatty acid synthase (Phosphatidylethanolamine, n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CFAS180E"]}, "metabolites": {"amet_c": -2.0, "pe181_c": -1.0, "ahcys_c": 2.0, "h_c": 2.0, "cpe180_c": 1.0}, "id": "CFAS180E", "gene_reaction_rule": "ECD_01632"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cyclopropane fatty acid synthase (Phosphatidylglycerol, n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CFAS180G"]}, "metabolites": {"amet_c": -2.0, "cpg180_c": 1.0, "ahcys_c": 2.0, "pg181_c": -1.0, "h_c": 2.0}, "id": "CFAS180G", "gene_reaction_rule": "ECD_01632"}, {"subsystem": "Transport, Inner Membrane", "name": "L-Cysteinylglycine (Cys-Gly) transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CGLYabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "cgly_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "cgly_c": 1.0}, "id": "CGLYabcpp", "gene_reaction_rule": "ECD_03395 and ECD_03394 and ECD_03393 and ECD_03392 and ECD_03391"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-Cysteinylglycine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CGLYtex"]}, "metabolites": {"cgly_e": -1.0, "cgly_p": 1.0}, "id": "CGLYtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Choline transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CHLabcpp"]}, "metabolites": {"h2o_c": -1.0, "chol_p": -1.0, "atp_c": -1.0, "chol_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "CHLabcpp", "gene_reaction_rule": "ECD_02058 and ECD_02059 and ECD_02060 and ECD_02061"}, {"subsystem": "Transport, Inner Membrane", "name": "Choline transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CHLt2pp"]}, "metabolites": {"chol_c": 1.0, "chol_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "CHLt2pp", "gene_reaction_rule": "ECD_00270 or ECD_01771"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Choline transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CHLtex"]}, "metabolites": {"chol_p": 1.0, "chol_e": -1.0}, "id": "CHLtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Unassigned", "name": "Choline dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CHOLD"]}, "metabolites": {"chol_c": -1.0, "nadh_c": 1.0, "betald_c": 1.0, "h_c": 1.0, "nad_c": -1.0}, "id": "CHOLD", "gene_reaction_rule": "ECD_00267"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Chorismate mutase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CHORM"]}, "metabolites": {"pphn_c": 1.0, "chor_c": -1.0}, "id": "CHORM", "gene_reaction_rule": "ECD_02488 or ECD_02489"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Chorismate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CHORS"]}, "metabolites": {"chor_c": 1.0, "pi_c": 1.0, "3psme_c": -1.0}, "id": "CHORS", "gene_reaction_rule": "ECD_02254"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Chorismate pyruvate lyase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CHRPL"]}, "metabolites": {"4hbz_c": 1.0, "chor_c": -1.0, "pyr_c": 1.0}, "id": "CHRPL", "gene_reaction_rule": "ECD_03911"}, {"subsystem": "Transport, Inner Membrane", "name": "Chitobiose transport via PEP:Pyr PTS (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CHTBSptspp"]}, "metabolites": {"pep_c": -1.0, "chtbs_p": -1.0, "pyr_c": 1.0, "chtbs6p_c": 1.0}, "id": "CHTBSptspp", "gene_reaction_rule": "ECD_02316"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Chitobiose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CHTBStex"]}, "metabolites": {"chtbs_p": 1.0, "chtbs_e": -1.0}, "id": "CHTBStex", "gene_reaction_rule": "ECD_02142 or ECD_00933 or ECD_01348 or ECD_00238"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Cinnamate dioxygenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CINNDO"]}, "metabolites": {"o2_c": -1.0, "cenchddd_c": 1.0, "cinnm_c": -1.0, "h_c": -1.0, "nad_c": 1.0, "nadh_c": -1.0}, "id": "CINNDO", "gene_reaction_rule": "ECD_02430 and ECD_02431 and ECD_02432 and ECD_02434"}, {"subsystem": "Citric Acid Cycle", "name": "Citrate lyase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CITL"]}, "metabolites": {"ac_c": 1.0, "oaa_c": 1.0, "cit_c": -1.0}, "id": "CITL", "gene_reaction_rule": "(ECD_00583 and ECD_00584 and ECD_00585) and ECD_00582"}, {"subsystem": "Transport, Inner Membrane", "name": "Citrate transport out via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CITt3pp"]}, "metabolites": {"cit_p": 1.0, "h_c": 1.0, "h_p": -1.0, "cit_c": -1.0}, "id": "CITt3pp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Inner Membrane", "name": "Citrate transport via succinate antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CITt7pp"]}, "metabolites": {"succ_p": 1.0, "succ_c": -1.0, "cit_p": -1.0, "cit_c": 1.0}, "id": "CITt7pp", "gene_reaction_rule": "ECD_00580"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Citrate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CITtex"]}, "metabolites": {"cit_e": -1.0, "cit_p": 1.0}, "id": "CITtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Cold lipid A transport via ABC system (periplasm to extracellular)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CLIPAabctex"]}, "metabolites": {"lipa_cold_e": 1.0, "atp_c": -1.0, "h2o_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "lipa_cold_p": -1.0, "pi_c": 1.0}, "id": "CLIPAabctex", "gene_reaction_rule": "ECD_03065 and ECD_03066 and ECD_03064 and ECD_04127 and ECD_04128"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cardiolipin hydrolase (periplasm, n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CLPNH120pp"]}, "metabolites": {"pg120_p": 1.0, "h2o_p": -1.0, "pa120_p": 1.0, "h_p": 1.0, "clpn120_p": -1.0}, "id": "CLPNH120pp", "gene_reaction_rule": ""}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cardiolipin hydrolase (periplasm, n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CLPNH140pp"]}, "metabolites": {"pa140_p": 1.0, "h2o_p": -1.0, "pg140_p": 1.0, "clpn140_p": -1.0, "h_p": 1.0}, "id": "CLPNH140pp", "gene_reaction_rule": ""}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cardiolipin hydrolase (periplasm, n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CLPNH141pp"]}, "metabolites": {"pa141_p": 1.0, "pg141_p": 1.0, "clpn141_p": -1.0, "h_p": 1.0, "h2o_p": -1.0}, "id": "CLPNH141pp", "gene_reaction_rule": ""}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cardiolipin hydrolase (periplasm, n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CLPNH160pp"]}, "metabolites": {"pg160_p": 1.0, "h2o_p": -1.0, "clpn160_p": -1.0, "pa160_p": 1.0, "h_p": 1.0}, "id": "CLPNH160pp", "gene_reaction_rule": ""}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cardiolipin hydrolase (periplasm, n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CLPNH161pp"]}, "metabolites": {"pg161_p": 1.0, "pa161_p": 1.0, "clpn161_p": -1.0, "h_p": 1.0, "h2o_p": -1.0}, "id": "CLPNH161pp", "gene_reaction_rule": ""}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cardiolipin hydrolase (periplasm, n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CLPNH180pp"]}, "metabolites": {"pa180_p": 1.0, "h2o_p": -1.0, "clpn180_p": -1.0, "h_p": 1.0, "pg180_p": 1.0}, "id": "CLPNH180pp", "gene_reaction_rule": ""}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cardiolipin hydrolase (periplasm, n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CLPNH181pp"]}, "metabolites": {"h2o_p": -1.0, "pg181_p": 1.0, "pa181_p": 1.0, "h_p": 1.0, "clpn181_p": -1.0}, "id": "CLPNH181pp", "gene_reaction_rule": ""}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cardiolipin synthase (periplasmic, n-C12:0)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CLPNS120pp"]}, "metabolites": {"pg120_p": -2.0, "clpn120_p": 1.0, "glyc_p": 1.0}, "id": "CLPNS120pp", "gene_reaction_rule": "ECD_00756 or ECD_01223"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cardiolipin synthase (periplasmic, n-C14:0)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CLPNS140pp"]}, "metabolites": {"clpn140_p": 1.0, "pg140_p": -2.0, "glyc_p": 1.0}, "id": "CLPNS140pp", "gene_reaction_rule": "ECD_01223 or ECD_00756"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cardiolipin synthase (periplasmic, n-C14:1)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CLPNS141pp"]}, "metabolites": {"clpn141_p": 1.0, "pg141_p": -2.0, "glyc_p": 1.0}, "id": "CLPNS141pp", "gene_reaction_rule": "ECD_00756 or ECD_01223"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cardiolipin synthase (periplasmic, n-C16:0)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CLPNS160pp"]}, "metabolites": {"pg160_p": -2.0, "clpn160_p": 1.0, "glyc_p": 1.0}, "id": "CLPNS160pp", "gene_reaction_rule": "ECD_00756 or ECD_01223"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cardiolipin synthase (periplasmic, n-C16:1)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CLPNS161pp"]}, "metabolites": {"pg161_p": -2.0, "clpn161_p": 1.0, "glyc_p": 1.0}, "id": "CLPNS161pp", "gene_reaction_rule": "ECD_01223 or ECD_00756"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cardiolipin synthase (periplasmic, n-C18:0)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CLPNS180pp"]}, "metabolites": {"clpn180_p": 1.0, "glyc_p": 1.0, "pg180_p": -2.0}, "id": "CLPNS180pp", "gene_reaction_rule": "ECD_00756 or ECD_01223"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cardiolipin synthase (periplasmic, n-C18:1)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CLPNS181pp"]}, "metabolites": {"clpn181_p": 1.0, "glyc_p": 1.0, "pg181_p": -2.0}, "id": "CLPNS181pp", "gene_reaction_rule": "ECD_00756 or ECD_01223"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Chloride transport out via proton antiport (2:1) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CLt3_2pp"]}, "metabolites": {"cl_p": -2.0, "h_c": -1.0, "h_p": 1.0, "cl_c": 2.0}, "id": "CLt3_2pp", "gene_reaction_rule": "ECD_00154 or ECD_01561"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Chloride (Cl-1) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CLtex"]}, "metabolites": {"cl_e": -1.0, "cl_p": 1.0}, "id": "CLtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "CMP nucleosidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CMPN"]}, "metabolites": {"r5p_c": 1.0, "csn_c": 1.0, "h2o_c": -1.0, "cmp_c": -1.0}, "id": "CMPN", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "CMP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CMPtex"]}, "metabolites": {"cmp_e": -1.0, "cmp_p": 1.0}, "id": "CMPtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or 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"ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "CO2 transporter via diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CO2tpp"]}, "metabolites": {"co2_p": -1.0, "co2_c": 1.0}, "id": "CO2tpp", "gene_reaction_rule": "s0001"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Cobalt (Co+2) ABC transporter (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["COBALT2abcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "cobalt2_c": -1.0, "cobalt2_p": 1.0, "adp_c": 1.0, "pi_c": 1.0, "h_c": 1.0}, "id": "COBALT2abcpp", "gene_reaction_rule": "ECD_03318"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Cobalt (Co+2) transport out via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["COBALT2t3pp"]}, "metabolites": {"h_c": 1.0, "h_p": -1.0, "cobalt2_c": -1.0, "cobalt2_p": 1.0}, "id": "COBALT2t3pp", "gene_reaction_rule": "ECD_00705 or ECD_03800"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Cobalt (Co+2) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["COBALT2tex"]}, "metabolites": {"cobalt2_e": -1.0, "cobalt2_p": 1.0}, "id": "COBALT2tex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Cobalt transport in via permease (no H+)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["COBALT2tpp"]}, "metabolites": {"cobalt2_p": -1.0, "cobalt2_c": 1.0}, "id": "COBALT2tpp", "gene_reaction_rule": "ECD_02912 or ECD_03692"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Lipid A core kinase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["COLIPAKpp"]}, "metabolites": 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"gene_reaction_rule": "ECD_00918"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Core oligosaccharide lipid A transport via ABC system (periplasm to extracellular)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["COLIPAabctex"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "colipa_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "colipa_e": 1.0}, "id": "COLIPAabctex", "gene_reaction_rule": "ECD_03065 and ECD_03066 and ECD_03064 and ECD_04127 and ECD_04128"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Coprogen(Fe(III)) reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CPGNR1"]}, "metabolites": {"cpgn_c": -2.0, "fe2_c": 2.0, "fadh2_c": -1.0, "h_c": 2.0, "cpgn_un_c": 2.0, "fad_c": 1.0}, "id": "CPGNR1", "gene_reaction_rule": ""}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Coprogen(Fe(III)) reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CPGNR2"]}, "metabolites": {"cpgn_c": -2.0, "fe2_c": 2.0, "fmnh2_c": -1.0, "fmn_c": 1.0, "h_c": 2.0, "cpgn_un_c": 2.0}, "id": "CPGNR2", "gene_reaction_rule": ""}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Coprogen(Fe(III)) reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CPGNR3"]}, "metabolites": {"rbflvrd_c": -1.0, "cpgn_c": -2.0, "fe2_c": 2.0, "h_c": 2.0, "cpgn_un_c": 2.0, "ribflv_c": 1.0}, "id": "CPGNR3", "gene_reaction_rule": ""}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Coprogen unloaded secretion (extracellular)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CPGNUtex"]}, "metabolites": {"cpgn_un_p": -1.0, "h_c": 1.0, "h_p": -1.0, "cpgn_un_e": 1.0}, "id": "CPGNUtex", "gene_reaction_rule": ""}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Coprogen unloaded secretion", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CPGNUtpp"]}, "metabolites": {"cpgn_un_p": 1.0, "cpgn_un_c": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "CPGNUtpp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Inner Membrane", "name": "Coprogen transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CPGNabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "cpgn_c": 1.0, "cpgn_p": -1.0, "adp_c": 1.0, "pi_c": 1.0, "h_c": 1.0}, "id": "CPGNabcpp", "gene_reaction_rule": "ECD_00152 and ECD_00150 and ECD_00151"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Coprogen Fe-loading reaction (spontaneaous)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CPGNexs"]}, "metabolites": {"cpgn_e": 1.0, "cpgn_un_e": -1.0, "fe3_e": -1.0}, "id": "CPGNexs", "gene_reaction_rule": "s0001"}, {"subsystem": "Transport, Outer Membrane", "name": "Coprogen transport via ton system (extracellular)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CPGNtonex"]}, "metabolites": {"cpgn_e": -1.0, "h_c": 1.0, "h_p": -1.0, "cpgn_p": 1.0}, "id": "CPGNtonex", "gene_reaction_rule": "ECD_01098 and (ECD_01226 and ECD_02879 and ECD_02880)"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "6-carboxy-5,6,7,8-tetrahydropterin synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CPH4S"]}, "metabolites": {"h2o_c": -1.0, "acald_c": 1.0, "ahdt_c": -1.0, "h_c": 1.0, "pppi_c": 1.0, "cph4_c": 1.0}, "id": "CPH4S", "gene_reaction_rule": "ECD_02610"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Cyclic pyranopterin monophosphate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CPMPS"]}, "metabolites": {"h2o_c": -1.0, "gtp_c": -1.0, "ppi_c": 1.0, "cpmp_c": 1.0}, "id": "CPMPS", "gene_reaction_rule": "ECD_00748 and ECD_00750"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Coproporphyrinogen oxidase (O2 required)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CPPPGO"]}, "metabolites": {"o2_c": -1.0, "h2o_c": 2.0, "pppg9_c": 1.0, "cpppg3_c": -1.0, "h_c": -2.0, "co2_c": 2.0}, "id": "CPPPGO", "gene_reaction_rule": "ECD_02336"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Oxygen Independent coproporphyrinogen-III oxidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CPPPGO2"]}, "metabolites": {"pppg9_c": 1.0, "dad_5_c": 2.0, "cpppg3_c": -1.0, "met__L_c": 2.0, "amet_c": -2.0, "co2_c": 2.0}, "id": "CPPPGO2", "gene_reaction_rule": "ECD_03752"}, {"subsystem": "Oxidative Phosphorylation", "name": "Gamma-butyrobetainyl-CoA: carnitine CoA transferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CRNBTCT"]}, "metabolites": {"crn_c": -1.0, "bbtcoa_c": -1.0, "crncoa_c": 1.0, "gbbtn_c": 1.0}, "id": "CRNBTCT", "gene_reaction_rule": "caiB"}, {"subsystem": "Oxidative Phosphorylation", "name": "Carnitine-CoA Ligase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CRNCAL2"]}, "metabolites": {"crn_c": -1.0, "crncoa_c": 1.0, "atp_c": -1.0, "coa_c": -1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "CRNCAL2", "gene_reaction_rule": "ECD_00041"}, {"subsystem": "Oxidative Phosphorylation", "name": "Carnitine-CoA racemase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CRNCAR"]}, "metabolites": {"crnDcoa_c": 1.0, "crncoa_c": -1.0}, "id": "CRNCAR", "gene_reaction_rule": "ECD_00040"}, {"subsystem": "Oxidative Phosphorylation", "name": "Crotonobetainyl-CoA: carnitine CoA transferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CRNCBCT"]}, "metabolites": {"crn_c": -1.0, "ctbtcoa_c": -1.0, "crncoa_c": 1.0, "ctbt_c": 1.0}, "id": "CRNCBCT", "gene_reaction_rule": "caiB"}, {"subsystem": "Oxidative Phosphorylation", "name": "Carnityl-CoA dehydratse", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CRNCDH"]}, "metabolites": {"ctbtcoa_c": 1.0, "h2o_c": 1.0, "crncoa_c": -1.0}, "id": "CRNCDH", "gene_reaction_rule": "ECD_00040"}, {"subsystem": "Oxidative Phosphorylation", "name": "D-Carnitine-CoA Ligase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CRNDCAL2"]}, "metabolites": {"atp_c": -1.0, "crnDcoa_c": 1.0, "coa_c": -1.0, "adp_c": 1.0, "pi_c": 1.0, "crn__D_c": -1.0}, "id": "CRNDCAL2", "gene_reaction_rule": "ECD_00041"}, {"subsystem": "Transport, Inner Membrane", "name": "D-carnitine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CRNDabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "crn__D_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "crn__D_c": 1.0}, "id": "CRNDabcpp", "gene_reaction_rule": "ECD_02533 and ECD_02534 and ECD_02535"}, {"subsystem": "Transport, Inner Membrane", "name": 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"Transport, Outer Membrane Porin", "name": "L-carnitine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CRNtex"]}, "metabolites": {"crn_p": 1.0, "crn_e": -1.0}, "id": "CRNtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Citric Acid Cycle", "name": "Citrate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CS"]}, "metabolites": {"h2o_c": -1.0, "accoa_c": -1.0, "cit_c": 1.0, "coa_c": 1.0, "h_c": 1.0, "oaa_c": -1.0}, "id": "CS", "gene_reaction_rule": "ECD_00680"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Cytosine deaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CSND"]}, "metabolites": {"ura_c": 1.0, "h2o_c": -1.0, "csn_c": -1.0, "h_c": -1.0, "nh4_c": 1.0}, "id": "CSND", "gene_reaction_rule": "ECD_00291"}, {"subsystem": "Transport, Inner Membrane", "name": "Cytosine 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"Crotonobetaine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CTBTabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "ctbt_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "ctbt_c": 1.0}, "id": "CTBTabcpp", "gene_reaction_rule": "ECD_02533 and ECD_02534 and ECD_02535"}, {"subsystem": "Transport, Inner Membrane", "name": "Cronobetaine outward transport (H+ antiport)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CTBTt2rpp"]}, "metabolites": {"ctbt_p": -1.0, "h_c": 1.0, "h_p": -1.0, "ctbt_c": 1.0}, "id": "CTBTt2rpp", "gene_reaction_rule": "ECD_03982"}, {"subsystem": "Membrane Lipid Metabolism", "name": "3-cis-2-trans-enoyl-CoA isomerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CTECOAI6", "TDECOAI"]}, "metabolites": {"tdecoa_c": -1.0, "td2coa_c": 1.0}, "id": "CTECOAI6_copy1", "gene_reaction_rule": "ECD_03737"}, {"subsystem": "Membrane Lipid 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Metabolism", "name": "Cuprous Oxidase (Cu+1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CU1Opp"]}, "metabolites": {"h2o_p": 2.0, "cu2_p": 4.0, "o2_p": -1.0, "cu_p": -4.0, "h_p": -4.0}, "id": "CU1Opp", "gene_reaction_rule": "ECD_00122"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Copper (Cu +1) ABC transporter (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CU1abcpp"]}, "metabolites": {"h2o_c": -1.0, "cu_c": -1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "cu_p": 1.0}, "id": "CU1abcpp", "gene_reaction_rule": "ECD_00435"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Copper (Cu+2) ABC transporter (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CU2abcpp"]}, "metabolites": {"cu2_c": -1.0, "h2o_c": -1.0, "atp_c": -1.0, "cu2_p": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "CU2abcpp", "gene_reaction_rule": "ECD_03318"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Copper (Cu+2) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CU2tex"]}, "metabolites": {"cu2_p": 1.0, "cu2_e": -1.0}, "id": "CU2tex", "gene_reaction_rule": "ECD_02142 or ECD_00238 or ECD_00933 or ECD_01348"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Copper transport in via permease (no H+)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CU2tpp"]}, "metabolites": {"cu2_c": 1.0, "cu2_p": -1.0}, "id": "CU2tpp", "gene_reaction_rule": "ECD_02912"}, {"subsystem": "Transport, Outer Membrane", "name": "Copper transport out via proton antiport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CUt3"]}, "metabolites": {"cu_e": 1.0, "h_e": -1.0, "h_c": 1.0, "cu_c": -1.0}, "id": "CUt3", "gene_reaction_rule": "ECD_00533 and ECD_00534 and ECD_00535 and ECD_00536"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Copper (Cu+1) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CUtex"]}, "metabolites": {"cu_e": -1.0, "cu_p": 1.0}, "id": "CUtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Unassigned", "name": "Cyanide sulfurtransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYANST"]}, "metabolites": {"so3_c": 1.0, "tcynt_c": 1.0, "tsul_c": -1.0, "cyan_c": -1.0, "h_c": 1.0}, "id": "CYANST", "gene_reaction_rule": "ECD_03276"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Cyanide sulfurtransferase (periplasmic)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYANSTpp"]}, "metabolites": {"so3_p": 1.0, "tcynt_p": 1.0, "cyan_p": -1.0, "h_p": 1.0, "tsul_p": -1.0}, "id": "CYANSTpp", "gene_reaction_rule": "ECD_01285"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Cyanide transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYANtex"]}, "metabolites": {"cyan_e": -1.0, "cyan_p": 1.0}, "id": "CYANtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Nitrogen Metabolism", "name": "Cyanate aminohydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYNTAH"]}, "metabolites": {"hco3_c": -1.0, "cynt_c": -1.0, "co2_c": 2.0, "h_c": -3.0, "nh4_c": 1.0}, "id": "CYNTAH", "gene_reaction_rule": "ECD_00294"}, {"subsystem": "Transport, Inner Membrane", "name": "Cyanate transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYNTt2pp"]}, "metabolites": {"cynt_p": -1.0, "cynt_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "CYNTt2pp", "gene_reaction_rule": "ECD_00295"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Cyanate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYNTtex"]}, "metabolites": {"cynt_p": 1.0, "cynt_e": -1.0}, "id": "CYNTtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Cysteine Metabolism", "name": "D-cysteine desulfhydrase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSDDS"]}, "metabolites": {"h2s_c": 1.0, "cys__D_c": -1.0, "pyr_c": 1.0, "nh4_c": 1.0, "h2o_c": -1.0}, "id": "CYSDDS", "gene_reaction_rule": "fliZ"}, {"subsystem": "Cysteine Metabolism", "name": "Cysteine Desulfhydrase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSDS"]}, "metabolites": {"cys__L_c": -1.0, "h2o_c": -1.0, "pyr_c": 1.0, "nh4_c": 1.0, "h2s_c": 1.0}, "id": "CYSDS", "gene_reaction_rule": "ECD_03592 or ECD_02881"}, {"subsystem": "Transport, Inner Membrane", "name": "D-cysteine uptake via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSDabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "cys__D_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "cys__D_c": 1.0, "pi_c": 1.0}, "id": "CYSDabcpp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-cysteine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYSDtex"]}, "metabolites": {"cys__D_p": 1.0, "cys__D_e": -1.0}, "id": "CYSDtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Cysteine Metabolism", "name": "Cysteine synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSS"]}, "metabolites": {"cys__L_c": 1.0, "ac_c": 1.0, "acser_c": -1.0, "h_c": 1.0, "h2s_c": -1.0}, "id": "CYSS", "gene_reaction_rule": "ECD_02314 or ECD_02321"}, {"subsystem": "Cysteine Metabolism", "name": "L-cysteine sulfinic acid desulfurase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSSADS"]}, "metabolites": {"so2_c": 1.0, "ala__L_c": 1.0, "h_c": -2.0, "3sala_c": -1.0}, "id": "CYSSADS", "gene_reaction_rule": "ECD_02661"}, {"subsystem": "Methionine Metabolism", "name": "Cystathionine b-lyase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSTL"]}, "metabolites": {"hcys__L_c": 1.0, "h2o_c": -1.0, "pyr_c": 1.0, "nh4_c": 1.0, "cyst__L_c": -1.0}, "id": "CYSTL", "gene_reaction_rule": "ECD_01591 or ECD_02881"}, {"subsystem": "tRNA Charging", "name": "Cysteinyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSTRS"]}, "metabolites": {"cystrna_c": 1.0, "atp_c": -1.0, "cys__L_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0, "trnacys_c": -1.0}, "id": "CYSTRS", "gene_reaction_rule": "ECD_00476"}, {"subsystem": "Transport, Inner Membrane", "name": "L-cysteine export via ABC system (cytoplasm to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSabc2pp"]}, "metabolites": {"cys__L_c": -1.0, "h2o_c": -1.0, "atp_c": -1.0, "cys__L_p": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "CYSabc2pp", "gene_reaction_rule": "ECD_00890 and ECD_00891"}, {"subsystem": "Transport, Inner Membrane", "name": "L-cysteine uptake via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSabcpp"]}, "metabolites": {"cys__L_c": 1.0, "h2o_c": -1.0, "atp_c": -1.0, "cys__L_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "CYSabcpp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-cysteine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYStex"]}, "metabolites": {"cys__L_p": 1.0, "cys__L_e": -1.0}, "id": "CYStex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "L-cysteine export via facilitated transport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYStpp"]}, "metabolites": {"cys__L_c": -1.0, "cys__L_p": 1.0}, "id": "CYStpp", "gene_reaction_rule": "ECD_02472 or ECD_01492"}, {"subsystem": "Oxidative Phosphorylation", "name": "Cytochrome oxidase bd (menaquinol-8: 2 protons) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYTBD2pp"]}, "metabolites": {"o2_c": -0.5, "h2o_c": 1.0, "mqn8_c": 1.0, "h_p": 2.0, "h_c": -2.0, "mql8_c": -1.0}, "id": "CYTBD2pp", "gene_reaction_rule": "ECD_00981 and ECD_00982"}, {"subsystem": "Oxidative Phosphorylation", "name": "Cytochrome oxidase bd (ubiquinol-8: 2 protons) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYTBDpp"]}, "metabolites": {"o2_c": -0.5, "h2o_c": 1.0, "h_p": 2.0, "q8h2_c": -1.0, "h_c": -2.0, "q8_c": 1.0}, "id": "CYTBDpp", "gene_reaction_rule": "(ECD_00981 and ECD_00982) or (ECD_00692 and ECD_00693)"}, {"subsystem": "Oxidative Phosphorylation", "name": "Cytochrome oxidase bo3 (ubiquinol-8: 4 protons) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYTBO3_4pp"]}, "metabolites": {"o2_c": -0.5, "h2o_c": 1.0, "h_p": 4.0, "q8h2_c": -1.0, "h_c": -4.0, "q8_c": 1.0}, "id": "CYTBO3_4pp", "gene_reaction_rule": "ECD_00380 and ECD_00381 and ECD_00382 and ECD_00383"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Cytidine deaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYTD"]}, "metabolites": {"cytd_c": -1.0, "uri_c": 1.0, "h2o_c": -1.0, "h_c": -1.0, "nh4_c": 1.0}, "id": "CYTD", "gene_reaction_rule": "ECD_02072"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Cytidine hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYTDH"]}, "metabolites": {"cytd_c": -1.0, "h2o_c": -1.0, "csn_c": 1.0, "rib__D_c": 1.0}, "id": "CYTDH", "gene_reaction_rule": "ECD_02091 or ECD_00617 or ECD_00034"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Cytidine kinase (GTP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYTDK2"]}, "metabolites": {"cytd_c": -1.0, "gdp_c": 1.0, "gtp_c": -1.0, "h_c": 1.0, "cmp_c": 1.0}, "id": "CYTDK2", "gene_reaction_rule": "ECD_01972"}, {"subsystem": "Transport, Inner Membrane", "name": "Cytidine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYTDt2pp", "CYTDt2rpp"]}, "metabolites": {"cytd_c": 1.0, "cytd_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "CYTDt2pp_copy1", "gene_reaction_rule": "ECD_02302 or ECD_02794"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Cytidine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYTDtex"]}, "metabolites": {"cytd_p": 1.0, "cytd_e": -1.0}, "id": "CYTDtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Cytidylate kinase (CMP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYTK1"]}, "metabolites": {"cdp_c": 1.0, "adp_c": 1.0, "atp_c": -1.0, "cmp_c": -1.0}, "id": "CYTK1", "gene_reaction_rule": "ECD_00914"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Cytidylate kinase (dCMP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYTK2"]}, "metabolites": {"dcmp_c": -1.0, "atp_c": -1.0, "adp_c": 1.0, "dcdp_c": 1.0}, "id": "CYTK2", "gene_reaction_rule": "ECD_00914"}, {"subsystem": "Transport, Inner Membrane", "name": "D-lactate transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["D_DASH_LACt2pp"]}, "metabolites": {"lac__D_c": 1.0, "h_c": 1.0, "h_p": -1.0, 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"gene_reaction_rule": "ECD_03914"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Diacylglycerol kinase (n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DAGK181"]}, "metabolites": {"12dgr181_c": -1.0, "pa181_c": 1.0, "h_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "DAGK181", "gene_reaction_rule": "ECD_03914"}, {"subsystem": "Transport, Inner Membrane", "name": "D-alanine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DALAt2pp"]}, "metabolites": {"ala__D_c": 1.0, "h_c": 1.0, "h_p": -1.0, "ala__D_p": -1.0}, "id": "DALAt2pp", "gene_reaction_rule": "ECD_04080"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-Alanine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DALAtex"]}, "metabolites": {"ala__D_e": -1.0, "ala__D_p": 1.0}, "id": "DALAtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "DAMP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DAMPtex"]}, "metabolites": {"damp_p": 1.0, "damp_e": -1.0}, "id": "DAMPtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2,3-diaminopropionate amonnia lyase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DAPAL"]}, "metabolites": {"h2o_c": -1.0, "pyr_c": 1.0, "nh4_c": 2.0, "23dappa_c": -1.0}, "id": "DAPAL", "gene_reaction_rule": "ECD_02704"}, {"subsystem": "Threonine and Lysine Metabolism", "name": "Diaminopimelate decarboxylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DAPDC"]}, "metabolites": {"co2_c": 1.0, "lys__L_c": 1.0, "h_c": -1.0, "26dap__M_c": -1.0}, "id": "DAPDC", "gene_reaction_rule": "ECD_02686"}, {"subsystem": "Threonine and Lysine Metabolism", "name": "Diaminopimelate epimerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DAPE"]}, "metabolites": {"26dap_LL_c": -1.0, "26dap__M_c": 1.0}, "id": "DAPE", "gene_reaction_rule": "ECD_03685"}, {"subsystem": "Transport, Inner Membrane", "name": "M-diaminopimelic acid ABC transport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DAPabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "26dap__M_c": 1.0, "26dap__M_p": -1.0, "adp_c": 1.0, "pi_c": 1.0, "h_c": 1.0}, "id": "DAPabcpp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "1,5-Diaminopentane transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DAPtex"]}, "metabolites": {"15dap_p": 1.0, "15dap_e": -1.0}, "id": "DAPtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-diacylglycerol synthetase (n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DASYN120"]}, "metabolites": {"ctp_c": -1.0, "cdpdddecg_c": 1.0, "ppi_c": 1.0, "h_c": -1.0, "pa120_c": -1.0}, "id": "DASYN120", "gene_reaction_rule": "ECD_00173"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-diacylglycerol synthetase (n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DASYN140"]}, "metabolites": {"ctp_c": -1.0, "cdpdtdecg_c": 1.0, "ppi_c": 1.0, "pa140_c": -1.0, "h_c": -1.0}, "id": "DASYN140", "gene_reaction_rule": "ECD_00173"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-diacylglycerol synthetase (n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DASYN141"]}, "metabolites": {"ctp_c": -1.0, "pa141_c": -1.0, "ppi_c": 1.0, "h_c": -1.0, "cdpdtdec7eg_c": 1.0}, "id": "DASYN141", "gene_reaction_rule": "ECD_00173"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-diacylglycerol synthetase (n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DASYN160"]}, "metabolites": {"ctp_c": -1.0, "pa160_c": -1.0, "ppi_c": 1.0, "h_c": -1.0, "cdpdhdecg_c": 1.0}, "id": "DASYN160", "gene_reaction_rule": "ECD_00173"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-diacylglycerol synthetase (n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DASYN161"]}, "metabolites": {"pa161_c": -1.0, "ctp_c": -1.0, "ppi_c": 1.0, "cdpdhdec9eg_c": 1.0, "h_c": -1.0}, "id": "DASYN161", "gene_reaction_rule": "ECD_00173"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-diacylglycerol synthetase (n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DASYN180"]}, "metabolites": {"ctp_c": -1.0, "cdpdodecg_c": 1.0, "ppi_c": 1.0, "h_c": -1.0, "pa180_c": -1.0}, "id": "DASYN180", "gene_reaction_rule": "ECD_00173"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-diacylglycerol synthetase (n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DASYN181"]}, "metabolites": {"ctp_c": -1.0, "pa181_c": -1.0, "ppi_c": 1.0, "h_c": -1.0, "cdpdodec11eg_c": 1.0}, "id": "DASYN181", "gene_reaction_rule": "ECD_00173"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "DATP amine hydrolysis (spontaneous)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DATPHs"]}, "metabolites": {"ditp_c": 1.0, "h2o_c": -1.0, "datp_c": -1.0, "h_c": -1.0, "nh4_c": 1.0}, "id": "DATPHs", "gene_reaction_rule": "s0001"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "3,4-Dihydroxy-2-butanone-4-phosphate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DB4PS"]}, "metabolites": {"db4p_c": 1.0, "ru5p__D_c": -1.0, "for_c": 1.0, "h_c": 1.0}, "id": "DB4PS", "gene_reaction_rule": "ECD_02913"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Dethiobiotin synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DBTS"]}, "metabolites": {"pi_c": 1.0, "dann_c": -1.0, "atp_c": -1.0, "h_c": 3.0, "adp_c": 1.0, "dtbt_c": 1.0, "co2_c": -1.0}, "id": "DBTS", "gene_reaction_rule": "ECD_00745"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Diacetylchitobiose-6-phosphate hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DC6PH"]}, "metabolites": {"acgam_c": 1.0, "h2o_c": -1.0, "chtbs6p_c": -1.0, "acgam6p_c": 1.0}, "id": "DC6PH", "gene_reaction_rule": "ECD_01703"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Decanoate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DCAtex"]}, "metabolites": {"dca_e": -1.0, "dca_p": 1.0}, "id": "DCAtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "DCMP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DCMPtex"]}, "metabolites": {"dcmp_p": 1.0, "dcmp_e": -1.0}, "id": "DCMPtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "DCTP deaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DCTPD"]}, "metabolites": {"dutp_c": 1.0, "nh4_c": 1.0, "h_c": -1.0, "h2o_c": -1.0, "dctp_c": -1.0}, "id": "DCTPD", "gene_reaction_rule": "ECD_01971"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Deoxycytidine deaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DCYTD"]}, "metabolites": {"dcyt_c": -1.0, "h2o_c": -1.0, "h_c": -1.0, "duri_c": 1.0, "nh4_c": 1.0}, "id": "DCYTD", "gene_reaction_rule": "ECD_02072"}, {"subsystem": "Transport, Inner Membrane", "name": "Deoxycytidine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DCYTt2pp"]}, "metabolites": {"dcyt_c": 1.0, "dcyt_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "DCYTt2pp", "gene_reaction_rule": "ECD_02302 or ECD_02794"}, {"subsystem": "Transport, Outer Membrane", "name": "Deoxycytidine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DCYTtex"]}, "metabolites": {"dcyt_p": 1.0, "dcyt_e": -1.0}, "id": "DCYTtex", "gene_reaction_rule": "ECD_00359"}, {"subsystem": "Transport, Outer Membrane", "name": "Fatty acid (dodecanoate) transport via facilitated irreversible diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DDCAtexi"]}, "metabolites": {"ddca_p": 1.0, "ddca_e": -1.0}, "id": "DDCAtexi", "gene_reaction_rule": "ECD_02268"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2-dehydro-3-deoxygalactonokinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DDGALK"]}, "metabolites": {"2dh3dgal6p_c": 1.0, "atp_c": -1.0, "2dh3dgal_c": -1.0, "adp_c": 1.0, "h_c": 1.0}, "id": "DDGALK", "gene_reaction_rule": "ECD_03577"}, {"subsystem": "Transport, Inner Membrane", "name": "2-dehydro-3-deoxy-D-gluconate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DDGLCNt2rpp"]}, "metabolites": {"2ddglcn_p": -1.0, "2ddglcn_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "DDGLCNt2rpp", "gene_reaction_rule": "ECD_03795"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "2-dehydro-3-deoxy-D-gluconate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DDGLCNtex"]}, "metabolites": {"2ddglcn_p": 1.0, "2ddglcn_e": -1.0}, "id": "DDGLCNtex", "gene_reaction_rule": "ECD_00933 or ECD_01348 or ECD_02142 or ECD_00238"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2-dehydro-3-deoxygluconokinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DDGLK"]}, "metabolites": {"h_c": 1.0, "2ddglcn_c": -1.0, "2ddg6p_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "DDGLK", "gene_reaction_rule": "ECD_03374"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DDPA"]}, "metabolites": {"pep_c": -1.0, "e4p_c": -1.0, "pi_c": 1.0, "2dda7p_c": 1.0, "h2o_c": -1.0}, "id": "DDPA", "gene_reaction_rule": "ECD_02490 or ECD_00707 or ECD_01673"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2-dehydro-3-deoxy-6-phosphogalactonate aldolase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DDPGALA"]}, "metabolites": {"2dh3dgal6p_c": -1.0, "pyr_c": 1.0, "g3p_c": 1.0}, "id": "DDPGALA", "gene_reaction_rule": "ECD_03576"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Deoxyguanylate kinase (dGMP:ATP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DGK1"]}, "metabolites": {"dgdp_c": 1.0, "dgmp_c": -1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "DGK1", "gene_reaction_rule": "ECD_03505"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "DGMP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DGMPtex"]}, "metabolites": {"dgmp_e": -1.0, "dgmp_p": 1.0}, "id": "DGMPtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Deoxyguanosine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DGSNt2pp"]}, "metabolites": {"dgsn_c": 1.0, "dgsn_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "DGSNt2pp", "gene_reaction_rule": "ECD_02794"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Deoxyguanosine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DGSNtex"]}, "metabolites": {"dgsn_p": 1.0, "dgsn_e": -1.0}, "id": "DGSNtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHAD1"]}, "metabolites": {"h2o_c": 1.0, "23dhmb_c": -1.0, "3mob_c": 1.0}, "id": "DHAD1", "gene_reaction_rule": "ECD_03649"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHAD2"]}, "metabolites": {"23dhmp_c": -1.0, "3mop_c": 1.0, "h2o_c": 1.0}, "id": "DHAD2", "gene_reaction_rule": "ECD_03649"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Dihydroxyacetone phosphotransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHAPT"]}, "metabolites": {"pep_c": -1.0, "pyr_c": 1.0, "dhap_c": 1.0, "dha_c": -1.0}, "id": "DHAPT", "gene_reaction_rule": "ECD_01175 and ECD_01174 and ECD_01173 and ECD_02315 and ECD_02316"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Dihydroxyacetone transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DHAtex"]}, "metabolites": {"dha_e": -1.0, "dha_p": 1.0}, "id": "DHAtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Dihydroxyacetone transport via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DHAtpp"]}, "metabolites": {"dha_p": -1.0, "dha_c": 1.0}, "id": "DHAtpp", "gene_reaction_rule": ""}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DHBD"]}, "metabolites": {"23dhb_c": 1.0, "nadh_c": 1.0, "h_c": 1.0, "nad_c": -1.0, "23ddhb_c": -1.0}, "id": "DHBD", "gene_reaction_rule": "ECD_00563"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "2,3-dihydroxybenzoate adenylate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHBS"]}, "metabolites": {"23dhba_c": 1.0, "23dhb_c": -1.0, "ppi_c": 1.0, "h_c": -1.0, "atp_c": -1.0}, "id": "DHBS", "gene_reaction_rule": "ECD_00561"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "2,3-dihydroxybenzoylserine hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHBSH"]}, "metabolites": {"23dhb_c": 1.0, "ser__L_c": 1.0, "h2o_c": -1.0, "23dhbzs_c": -1.0}, "id": "DHBSH", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "2,3-dihydroxycinnamate dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHCIND"]}, "metabolites": {"dhcinnm_c": 1.0, "nadh_c": 1.0, "cenchddd_c": -1.0, "nad_c": -1.0, "h_c": 1.0}, "id": "DHCIND", "gene_reaction_rule": "ECD_02433"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2,3-dihydroxycinnamate 1,2-dioxygenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHCINDO"]}, "metabolites": {"hkntd_c": 1.0, "o2_c": -1.0, "dhcinnm_c": -1.0, "h_c": 1.0}, "id": "DHCINDO", "gene_reaction_rule": "ECD_00302"}, {"subsystem": "Threonine and Lysine Metabolism", "name": "Dihydrodipicolinate reductase (NADPH)", "upper_bound": 1000.0, 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"1,4-dihydroxy-2-napthoyl-CoA synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHNCOAS"]}, "metabolites": {"sbzcoa_c": -1.0, "h2o_c": 1.0, "h_c": -1.0, "14dhncoa_c": 1.0}, "id": "DHNCOAS", "gene_reaction_rule": "ECD_02189"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "1,4-dihydroxy-2-napthoyl-CoA thioesterase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHNCOAT"]}, "metabolites": {"h2o_c": -1.0, "dhna_c": 1.0, "coa_c": 1.0, "h_c": 1.0, "14dhncoa_c": -1.0}, "id": "DHNCOAT", "gene_reaction_rule": "ECD_00696"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Dihydroneopterin aldolase reversible", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DHNPA2r"]}, "metabolites": {"dhnpt_c": -1.0, "6hmhpt_c": 1.0, "gcald_c": 1.0}, "id": "DHNPA2r", "gene_reaction_rule": "ECD_02928"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Dihydroneopterin epimerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DHNPTE"]}, "metabolites": {"dhnpt_c": -1.0, "dhmpt_c": 1.0}, "id": "DHNPTE", "gene_reaction_rule": "ECD_02928"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Dihydoorotic acid dehydrogenase (quinone8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHORD2"]}, "metabolites": {"q8h2_c": 1.0, "dhor__S_c": -1.0, "q8_c": -1.0, "orot_c": 1.0}, "id": "DHORD2", "gene_reaction_rule": "ECD_00949"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Dihydroorotic acid (menaquinone-8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHORD5"]}, "metabolites": {"dhor__S_c": -1.0, "mqn8_c": -1.0, "mql8_c": 1.0, "orot_c": 1.0}, "id": "DHORD5", "gene_reaction_rule": "ECD_00949"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Fumarate dependent DHORD", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHORDfum"]}, "metabolites": {"fum_c": -1.0, "succ_c": 1.0, "dhor__S_c": -1.0, "orot_c": 1.0}, "id": "DHORDfum", "gene_reaction_rule": ""}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Dihydroorotase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DHORTS"]}, "metabolites": {"cbasp_c": 1.0, "h2o_c": -1.0, "dhor__S_c": -1.0, "h_c": 1.0}, "id": "DHORTS", "gene_reaction_rule": "ECD_01058"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2,3-dihydroxyphenylpropionate dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHPPD"]}, "metabolites": {"cechddd_c": -1.0, "dhpppn_c": 1.0, "nadh_c": 1.0, "h_c": 1.0, "nad_c": -1.0}, "id": "DHPPD", "gene_reaction_rule": "ECD_02433"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Diaminohydroxyphosphoribosylaminopryrimidine deaminase (25drapp)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": 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"thptdn_c": 1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -3.0}, "id": "DHPTDNR", "gene_reaction_rule": "ECD_00539"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Dihydropteridine reductase (NADH)", "upper_bound": 0.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHPTDNRN"]}, "metabolites": {"thptdn_c": 1.0, "dhptdn_c": -1.0, "nadh_c": -1.0, "h_c": -3.0, "nad_c": 1.0}, "id": "DHPTDNRN", "gene_reaction_rule": "ECD_00539"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Dihydroneopterin triphosphate 2'-epimerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DHPTPE"]}, "metabolites": {"dhmptp_c": 1.0, "ahdt_c": -1.0}, "id": "DHPTPE", "gene_reaction_rule": "ECD_02228"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "3-dehydroquinate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHQS"]}, "metabolites": {"3dhq_c": 1.0, "pi_c": 1.0, "2dda7p_c": -1.0}, "id": "DHQS", "gene_reaction_rule": "ECD_03241"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "3-dehydroquinate dehydratase, irreversible", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHQTi"]}, "metabolites": {"3dhsk_c": 1.0, "h2o_c": 1.0, "3dhq_c": -1.0}, "id": "DHQTi", "gene_reaction_rule": "ECD_01662"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "DIMP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DIMPtex"]}, "metabolites": {"dimp_p": 1.0, "dimp_e": -1.0}, "id": "DIMPtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Deoxyinosine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DINSt2pp"]}, "metabolites": {"din_p": -1.0, "din_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "DINSt2pp", "gene_reaction_rule": "ECD_02794"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Deoxyinosine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DINStex"]}, "metabolites": {"din_p": 1.0, "din_e": -1.0}, "id": "DINStex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2,5-diketo-D-gluconate reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DKGLCNR1"]}, "metabolites": {"25dkglcn_c": -1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0, "2dhguln_c": 1.0}, "id": "DKGLCNR1", "gene_reaction_rule": "ECD_00200 or ECD_02885"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2,5-diketo-D-gluconate reductase (NADH)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DKGLCNR2x"]}, "metabolites": {"25dkglcn_c": -1.0, "5dglcn_c": 1.0, "nadh_c": -1.0, "nad_c": 1.0, "h_c": -1.0}, "id": "DKGLCNR2x", "gene_reaction_rule": "ECD_03403"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2,5-diketo-D-gluconate reductase (NADPH)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DKGLCNR2y"]}, "metabolites": {"nadph_c": -1.0, "25dkglcn_c": -1.0, "5dglcn_c": 1.0, "nadp_c": 1.0, "h_c": -1.0}, "id": "DKGLCNR2y", "gene_reaction_rule": "ECD_03403"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Dimethylallyltranstransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DMATT"]}, "metabolites": {"dmpp_c": -1.0, "ppi_c": 1.0, "ipdp_c": -1.0, "grdp_c": 1.0}, "id": "DMATT", "gene_reaction_rule": "ECD_00369"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (dmpp)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DMPPS"]}, "metabolites": {"h2o_c": 1.0, 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"Dimethyl sulfoxide transport via diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DMSOtpp"]}, "metabolites": {"dmso_p": -1.0, "dmso_c": 1.0}, "id": "DMSOtpp", "gene_reaction_rule": "s0001"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Dimethyl sulfide transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DMStex"]}, "metabolites": {"dms_p": 1.0, "dms_e": -1.0}, "id": "DMStex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Dihydroneopterin monophosphate dephosphorylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DNMPPA"]}, "metabolites": {"h2o_c": -1.0, "dhnpt_c": 1.0, "pi_c": 1.0, "dhpmp_c": -1.0}, "id": "DNMPPA", "gene_reaction_rule": ""}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": 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"Lipopolysaccharide Biosynthesis / Recycling", "name": "Endotoxin Synthesis (myristoyl transferase)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EDTXS2"]}, "metabolites": {"kdo2lipid4L_c": -1.0, "ACP_c": 1.0, "lipa_c": 1.0, "myrsACP_c": -1.0}, "id": "EDTXS2", "gene_reaction_rule": "ECD_01826"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Endotoxin Synthesis (palmitoleoyl ACP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EDTXS3"]}, "metabolites": {"kdo2lipid4_c": -1.0, "ACP_c": 1.0, "hdeACP_c": -1.0, "kdo2lipid4p_c": 1.0}, "id": "EDTXS3", "gene_reaction_rule": "ECD_02288"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Endotoxin Synthesis (myristoyl transferase)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EDTXS4"]}, "metabolites": {"ACP_c": 1.0, "lipa_cold_c": 1.0, "kdo2lipid4p_c": -1.0, "myrsACP_c": -1.0}, "id": "EDTXS4", 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ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Fructose transport via PEP:Pyr PTS (f6p generating) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["FRUpts2pp"]}, "metabolites": {"pep_c": -1.0, "pyr_c": 1.0, "fru_p": -1.0, "f6p_c": 1.0}, "id": "FRUpts2pp", "gene_reaction_rule": "ECD_01787 and ECD_01788 and ECD_01789 and ECD_02315 and ECD_02316"}, {"subsystem": "Transport, Inner Membrane", "name": "D-fructose transport via PEP:Pyr PTS (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["FRUptspp"]}, "metabolites": {"pep_c": -1.0, "pyr_c": 1.0, "f1p_c": 1.0, "fru_p": -1.0}, "id": "FRUptspp", "gene_reaction_rule": "ECD_02096 and ECD_02098 and ECD_02315 and ECD_02316"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-fructose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["FRUtex"]}, "metabolites": {"fru_e": -1.0, "fru_p": 1.0}, "id": "FRUtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Folate Metabolism", "name": "Formyltetrahydrofolate deformylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["FTHFD"]}, "metabolites": {"h_c": 1.0, "h2o_c": -1.0, "thf_c": 1.0, "for_c": 1.0, "10fthf_c": -1.0}, "id": "FTHFD", "gene_reaction_rule": "ECD_01208"}, {"subsystem": "Folate Metabolism", "name": "Formate-tetrahydrofolate ligase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["FTHFLi"]}, "metabolites": {"for_c": -1.0, "atp_c": -1.0, "thf_c": -1.0, "adp_c": 1.0, "pi_c": 1.0, "10fthf_c": 1.0}, "id": "FTHFLi", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-fucose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["FUCtex"]}, "metabolites": {"fuc__L_p": 1.0, "fuc__L_e": -1.0}, "id": "FUCtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Citric Acid Cycle", "name": "Fumarase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["FUM"]}, "metabolites": {"h2o_c": -1.0, "fum_c": -1.0, "mal__L_c": 1.0}, "id": "FUM", "gene_reaction_rule": "ECD_01581 or ECD_01580"}, {"subsystem": "Transport, Inner Membrane", "name": "Fumarate transport via proton symport (2 H) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["FUMt2_2pp"]}, "metabolites": {"fum_p": -1.0, "fum_c": 1.0, "h_c": 2.0, "h_p": -2.0}, "id": "FUMt2_2pp", "gene_reaction_rule": "ECD_03376"}, {"subsystem": "Transport, Inner Membrane", "name": "Fumarate transport via proton symport (3 H) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["FUMt2_3pp"]}, "metabolites": {"fum_p": -1.0, "fum_c": 1.0, "h_c": 3.0, "h_p": -3.0}, "id": "FUMt2_3pp", "gene_reaction_rule": "ECD_04008 or ECD_03994 or ECD_00591"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Fumarate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["FUMtex"]}, "metabolites": {"fum_p": 1.0, "fum_e": -1.0}, "id": "FUMtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Fusidic acid transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["FUSAtex"]}, "metabolites": {"fusa_e": -1.0, "fusa_p": 1.0}, "id": "FUSAtex", "gene_reaction_rule": "ECD_01348 or ECD_02142 or ECD_00933 or ECD_00238"}, {"subsystem": "Transport, Outer Membrane", "name": "Fusidic acid transport via TolC system", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["FUSAtpp"]}, "metabolites": {"fusa_e": 1.0, "fusa_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "FUSAtpp", "gene_reaction_rule": "ECD_00414 and ECD_02361 and ECD_02907"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Glucosamine-1-phosphate N-acetyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G1PACT"]}, "metabolites": {"gam1p_c": -1.0, "coa_c": 1.0, "h_c": 1.0, "accoa_c": -1.0, "acgam1p_c": 1.0}, "id": "G1PACT", "gene_reaction_rule": "ECD_03614"}, {"subsystem": "Glycolysis/Gluconeogenesis", "name": "Glucose-1-phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G1PPpp"]}, "metabolites": {"pi_p": 1.0, "h2o_p": -1.0, "glc__D_p": 1.0, "g1p_p": -1.0}, "id": "G1PPpp", "gene_reaction_rule": "ECD_01005"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Glucose-1-phosphate thymidylyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G1PTT"]}, "metabolites": {"dtdpglu_c": 1.0, "ppi_c": 1.0, "dttp_c": -1.0, "h_c": -1.0, "g1p_c": -1.0}, "id": "G1PTT", "gene_reaction_rule": "ECD_01945 or ECD_03667"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-glucose 1-phosphate transport via diffusion", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["G1Ptex"]}, "metabolites": {"g1p_e": -1.0, "g1p_p": 1.0}, "id": "G1Ptex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Glutamate-1-semialdehyde aminotransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["G1SAT"]}, "metabolites": {"5aop_c": 1.0, "glu1sa_c": -1.0}, "id": "G1SAT", "gene_reaction_rule": "ECD_00153"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Glycerol-2-phosphate phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G2PP"]}, "metabolites": {"h2o_c": -1.0, "pi_c": 1.0, "glyc2p_c": -1.0, "glyc_c": 1.0}, "id": "G2PP", "gene_reaction_rule": "ECD_02425"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Glycerol 2-phosphate phosphatase (periplasmic)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G2PPpp"]}, "metabolites": {"pi_p": 1.0, "h2o_p": -1.0, "glyc_p": 1.0, "glyc2p_p": -1.0}, "id": "G2PPpp", "gene_reaction_rule": "ECD_03927"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Glycerol-3-phosphate acyltransferase (C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PAT120"]}, "metabolites": {"1ddecg3p_c": 1.0, "glyc3p_c": -1.0, "ACP_c": 1.0, "ddcaACP_c": -1.0}, "id": "G3PAT120", "gene_reaction_rule": "ECD_01090 and ECD_03913"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Glycerol-3-phosphate acyltransferase (C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PAT140"]}, "metabolites": {"1tdecg3p_c": 1.0, "glyc3p_c": -1.0, "ACP_c": 1.0, "myrsACP_c": -1.0}, "id": "G3PAT140", "gene_reaction_rule": "ECD_01090 and ECD_03913"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Glycerol-3-phosphate acyltransferase (C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PAT141"]}, "metabolites": {"tdeACP_c": -1.0, "glyc3p_c": -1.0, "ACP_c": 1.0, "1tdec7eg3p_c": 1.0}, "id": "G3PAT141", "gene_reaction_rule": "ECD_01090 and ECD_03913"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Glycerol-3-phosphate acyltransferase (C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PAT160"]}, "metabolites": {"glyc3p_c": -1.0, "ACP_c": 1.0, "1hdecg3p_c": 1.0, "palmACP_c": -1.0}, "id": "G3PAT160", "gene_reaction_rule": "ECD_01090 and ECD_03913"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Glycerol-3-phosphate acyltransferase (C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PAT161"]}, "metabolites": {"1hdec9eg3p_c": 1.0, "glyc3p_c": -1.0, "ACP_c": 1.0, "hdeACP_c": -1.0}, "id": "G3PAT161", "gene_reaction_rule": "ECD_01090 and ECD_03913"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Glycerol-3-phosphate acyltransferase (C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PAT180"]}, "metabolites": {"glyc3p_c": -1.0, "ACP_c": 1.0, "ocdcaACP_c": -1.0, "1odecg3p_c": 1.0}, "id": "G3PAT180", "gene_reaction_rule": "ECD_01090 and ECD_03913"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Glycerol-3-phosphate acyltransferase (C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PAT181"]}, "metabolites": {"1odec11eg3p_c": 1.0, "glyc3p_c": -1.0, "ACP_c": 1.0, "octeACP_c": -1.0}, "id": "G3PAT181", "gene_reaction_rule": "ECD_01090 and ECD_03913"}, {"subsystem": "Transport, Inner Membrane", "name": "Sn-glycerol-3-phosphocholine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PCabcpp"]}, "metabolites": {"h2o_c": -1.0, "g3pc_p": -1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "g3pc_c": 1.0}, "id": "G3PCabcpp", "gene_reaction_rule": "ECD_03301 and ECD_03302 and ECD_03299 and ECD_03300"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glycero-3-phosphocholine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["G3PCtex"]}, "metabolites": {"g3pc_e": -1.0, "g3pc_p": 1.0}, "id": "G3PCtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Glycerol-3-phosphate dehydrogenase (NADP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["G3PD2"]}, "metabolites": {"nadph_c": 1.0, "glyc3p_c": -1.0, "dhap_c": 1.0, "nadp_c": -1.0, "h_c": 1.0}, "id": "G3PD2", "gene_reaction_rule": "ECD_03466"}, {"subsystem": "Oxidative Phosphorylation", "name": "Glycerol-3-phosphate dehydrogenase (ubiquinone-8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PD5"]}, "metabolites": {"q8h2_c": 1.0, "glyc3p_c": -1.0, "dhap_c": 1.0, "q8_c": -1.0}, "id": "G3PD5", "gene_reaction_rule": "(ECD_02167 and ECD_02168 and ECD_02169) or ECD_03277"}, {"subsystem": "Oxidative Phosphorylation", "name": "Glycerol-3-phosphate dehydrogenase (menaquinone-8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PD6"]}, "metabolites": {"glyc3p_c": -1.0, "dhap_c": 1.0, "mqn8_c": -1.0, "mql8_c": 1.0}, "id": "G3PD6", "gene_reaction_rule": "ECD_02167 and ECD_02168 and ECD_02169"}, {"subsystem": "Oxidative Phosphorylation", "name": "Glycerol-3-phosphate dehydrogenase (demethylmenaquinone-8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PD7"]}, "metabolites": {"glyc3p_c": -1.0, "dhap_c": 1.0, "2dmmq8_c": -1.0, "2dmmql8_c": 1.0}, "id": "G3PD7", "gene_reaction_rule": "ECD_02167 and 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"name": "Galactokinase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GALKr"]}, "metabolites": {"adp_c": 1.0, "gal_c": -1.0, "gal1p_c": 1.0, "atp_c": -1.0, "h_c": 1.0}, "id": "GALKr", "gene_reaction_rule": "ECD_01951"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Aldose-1-epimerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GALM2pp"]}, "metabolites": {"gal_p": 1.0, "gal_bD_p": -1.0}, "id": "GALM2pp", "gene_reaction_rule": "zitB"}, {"subsystem": "Alternate Carbon Metabolism", "name": "A-galactosidase (melibiose)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GALS3"]}, "metabolites": {"glc__D_c": 1.0, "melib_c": -1.0, "gal_c": 1.0, "h2o_c": -1.0}, "id": "GALS3", "gene_reaction_rule": "ECD_03990"}, {"subsystem": "Transport, Inner Membrane", "name": "Galactitol transport via PEP:Pyr PTS (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": 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"id": "GAM6Pt6_2pp", "gene_reaction_rule": "ECD_03550"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-glucosamine 6-phosphate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GAMAN6Ptex"]}, "metabolites": {"gam6p_p": 1.0, "gam6p_e": -1.0}, "id": "GAMAN6Ptex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "D-glucosamine transport via PEP:Pyr PTS (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GAMptspp"]}, "metabolites": {"pep_c": -1.0, "gam_p": -1.0, "pyr_c": 1.0, "gam6p_c": 1.0}, "id": "GAMptspp", "gene_reaction_rule": "ECD_01787 and ECD_01788 and ECD_01789 and ECD_02315 and ECD_02316"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-glucosamine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": 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{"original_bigg_ids": ["GART"]}, "metabolites": {"adp_c": 1.0, "atp_c": -1.0, "fgam_c": 1.0, "h_c": 1.0, "for_c": -1.0, "gar_c": -1.0, "pi_c": 1.0}, "id": "GART", "gene_reaction_rule": "ECD_01820"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Gamma-butyrobetaine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GBBTNtex"]}, "metabolites": {"gbbtn_e": -1.0, "gbbtn_p": 1.0}, "id": "GBBTNtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Folate Metabolism", "name": "Glycolaldehyde dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GCALDD"]}, "metabolites": {"h2o_c": -1.0, "glyclt_c": 1.0, "h_c": 2.0, "nad_c": -1.0, "nadh_c": 1.0, "gcald_c": -1.0}, "id": "GCALDD", "gene_reaction_rule": "ECD_01370"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "GDP-4-dehydro-6-deoxy-D-mannose epimerase", 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["GDPMNP"]}, "metabolites": {"h2o_c": -1.0, "gmp_c": 1.0, "man1p_c": 1.0, "h_c": 2.0, "gdpmann_c": -1.0}, "id": "GDPMNP", "gene_reaction_rule": "ECD_02358"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GDPTPDP"]}, "metabolites": {"gdptp_c": -1.0, "ppi_c": 1.0, "gtp_c": 1.0, "h2o_c": -1.0}, "id": "GDPTPDP", "gene_reaction_rule": "ECD_03507"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "GDP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GDPtex"]}, "metabolites": {"gdp_e": -1.0, "gdp_p": 1.0}, "id": "GDPtex", "gene_reaction_rule": "ECD_01348 or ECD_02142 or ECD_00933 or ECD_00238"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Glutamine-fructose-6-phosphate transaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": 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reversible", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GHMT2r"]}, "metabolites": {"h2o_c": 1.0, "ser__L_c": -1.0, "thf_c": -1.0, "mlthf_c": 1.0, "gly_c": 1.0}, "id": "GHMT2r", "gene_reaction_rule": "ECD_02443"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Guanylate kinase (GMP:ATP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GK1"]}, "metabolites": {"gmp_c": -1.0, "gdp_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "GK1", "gene_reaction_rule": "ECD_03505"}, {"subsystem": "Glycolysis/Gluconeogenesis", "name": "1,4-alpha-glucan branching enzyme (glycogen -> bglycogen)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLBRAN2"]}, "metabolites": {"bglycogen_c": 1.0, "glycogen_c": -1.0}, "id": "GLBRAN2", "gene_reaction_rule": "ECD_03284"}, {"subsystem": "Alternate Carbon Metabolism", "name": "D-glucose O-acetyltransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": 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transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLCNtex"]}, "metabolites": {"glcn_p": 1.0, "glcn_e": -1.0}, "id": "GLCNtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Glycolysis/Gluconeogenesis", "name": "Glycogen phosphorylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLCP"]}, "metabolites": {"pi_c": -1.0, "glycogen_c": -1.0, "g1p_c": 1.0}, "id": "GLCP", "gene_reaction_rule": "ECD_03280 or ECD_03269"}, {"subsystem": "Glycolysis/Gluconeogenesis", "name": "Glycogen phosphorylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLCP2"]}, "metabolites": {"bglycogen_c": -1.0, "pi_c": -1.0, "g1p_c": 1.0}, "id": "GLCP2", "gene_reaction_rule": "ECD_03269 or ECD_03280"}, {"subsystem": "Alternate Carbon Metabolism", "name": "5-dehydro-4-deoxyglucarate aldolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLCRAL"]}, "metabolites": {"pyr_c": 1.0, "5dh4dglc_c": -1.0, "2h3oppan_c": 1.0}, "id": "GLCRAL", "gene_reaction_rule": "ECD_02991"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Glucarate dehydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLCRD"]}, "metabolites": {"h2o_c": 1.0, "5dh4dglc_c": 1.0, "glcr_c": -1.0}, "id": "GLCRD", "gene_reaction_rule": "ECD_02633 or ECD_02632"}, {"subsystem": "Transport, Inner Membrane", "name": "D-glucarate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLCRt2rpp"]}, "metabolites": {"glcr_p": -1.0, "h_p": -1.0, "glcr_c": 1.0, "h_c": 1.0}, "id": "GLCRt2rpp", "gene_reaction_rule": "ECD_02992 or ECD_02634"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-glucarate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLCRtex"]}, "metabolites": {"glcr_e": -1.0, "glcr_p": 1.0}, "id": "GLCRtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Glycolysis/Gluconeogenesis", "name": "Glycogen synthase (ADPGlc)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLCS1"]}, "metabolites": {"adp_c": 1.0, "adpglc_c": -1.0, "glycogen_c": 1.0, "h_c": 1.0}, "id": "GLCS1", "gene_reaction_rule": "ECD_03281"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Glucosyltransferase I (LPS core synthesis)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLCTR1"]}, "metabolites": {"icolipa_c": -1.0, "udp_c": 1.0, "udpg_c": -1.0, "h_c": 1.0, "gicolipa_c": 1.0}, "id": "GLCTR1", "gene_reaction_rule": "ECD_03488"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-glucuronate 1-phosphate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLCUR1Ptex"]}, "metabolites": {"glcur1p_p": 1.0, "glcur1p_e": -1.0}, "id": "GLCUR1Ptex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "D-glucuronate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLCURt2rpp"]}, "metabolites": {"glcur_c": 1.0, "h_c": 1.0, "h_p": -1.0, "glcur_p": -1.0}, "id": "GLCURt2rpp", "gene_reaction_rule": "ECD_03795 or ECD_02962"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-glucuronat transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLCURtex"]}, "metabolites": {"glcur_e": -1.0, "glcur_p": 1.0}, "id": "GLCURtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "D-glucose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLCabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "glc__D_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "glc__D_c": 1.0, "pi_c": 1.0}, "id": "GLCabcpp", "gene_reaction_rule": "ECD_02078 and mglB and ECD_02077"}, {"subsystem": "Transport, Inner Membrane", "name": "D-glucose transport via PEP:Pyr PTS (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLCptspp"]}, "metabolites": {"pep_c": -1.0, "g6p_c": 1.0, "glc__D_p": -1.0, "pyr_c": 1.0}, "id": "GLCptspp", "gene_reaction_rule": "(ECD_02317 and ECD_01590 and ECD_02315 and ECD_02316) or (ECD_02317 and ECD_01097 and ECD_02315 and ECD_02316) or (ECD_01787 and ECD_01788 and ECD_01789 and ECD_02315 and ECD_02316)"}, {"subsystem": "Transport, Inner Membrane", "name": "D-glucose transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLCt2pp"]}, "metabolites": {"glc__D_c": 1.0, "glc__D_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "GLCt2pp", "gene_reaction_rule": "ECD_02773"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glucose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLCtex", "GLCtexi"]}, "metabolites": {"glc__D_p": 1.0, "glc__D_e": -1.0}, "id": "GLCtex_copy1", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Outer Membrane", "name": "Glucose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLCtex", "GLCtexi"]}, "metabolites": {"glc__D_p": 1.0, "glc__D_e": -1.0}, "id": "GLCtex_copy2", "gene_reaction_rule": "ECD_03908"}, {"subsystem": "Glycolysis/Gluconeogenesis", "name": "Glycogen debranching enzyme (bglycogen -> glycogen)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLDBRAN2"]}, "metabolites": {"bglycogen_c": -1.0, "glycogen_c": 1.0}, "id": "GLDBRAN2", "gene_reaction_rule": "ECD_03283"}, {"subsystem": "Glycolysis/Gluconeogenesis", "name": "Glucose-1-phosphate adenylyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLGC"]}, "metabolites": {"h_c": -1.0, "ppi_c": 1.0, "adpglc_c": 1.0, "atp_c": -1.0, "g1p_c": -1.0}, "id": "GLGC", "gene_reaction_rule": "ECD_03282"}, {"subsystem": "Glutamate Metabolism", "name": "Glutamine synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLNS"]}, "metabolites": {"atp_c": -1.0, "glu__L_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "nh4_c": -1.0, "gln__L_c": 1.0}, "id": "GLNS", "gene_reaction_rule": "ECD_03755 or ECD_01274"}, {"subsystem": "tRNA Charging", "name": "Glutaminyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLNTRS"]}, "metabolites": {"glntrna_c": 1.0, "atp_c": -1.0, "trnagln_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0, "gln__L_c": -1.0}, "id": "GLNTRS", "gene_reaction_rule": "ECD_00637"}, {"subsystem": "Transport, Inner Membrane", "name": "L-glutamine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLNabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "gln__L_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "gln__L_c": 1.0}, "id": "GLNabcpp", "gene_reaction_rule": "ECD_00778 and ECD_00777 and ECD_00776"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-glutamine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLNtex"]}, "metabolites": {"gln__L_e": -1.0, "gln__L_p": 1.0}, "id": "GLNtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Galactitol-1-phosphate dehydrogenase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLTPD"]}, "metabolites": {"nadh_c": 1.0, "tag6p__D_c": 1.0, "galt1p_c": -1.0, "nad_c": -1.0, "h_c": 1.0}, "id": "GLTPD", "gene_reaction_rule": "ECD_02017"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Glutamate 5-kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLU5K"]}, "metabolites": {"glu__L_c": -1.0, "glu5p_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "GLU5K", "gene_reaction_rule": "ECD_00239"}, {"subsystem": "Transport, Inner Membrane", "name": "4-aminobutyrate/glutamate antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLUABUTt7pp"]}, "metabolites": {"glu__L_p": -1.0, "glu__L_c": 1.0, "4abut_p": 1.0, "4abut_c": -1.0}, "id": "GLUABUTt7pp", "gene_reaction_rule": "ECD_01450"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Gamma-glutamylcysteine synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLUCYS"]}, "metabolites": {"cys__L_c": -1.0, "pi_c": 1.0, "atp_c": -1.0, "glu__L_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "glucys_c": 1.0}, "id": "GLUCYS", "gene_reaction_rule": "ECD_02543"}, {"subsystem": "Glutamate Metabolism", "name": "Glutamate Decarboxylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLUDC"]}, "metabolites": {"glu__L_c": -1.0, "co2_c": 1.0, "h_c": -1.0, "4abut_c": 1.0}, "id": "GLUDC", "gene_reaction_rule": "ECD_01451"}, {"subsystem": "Glutamate Metabolism", "name": "Glutamate dehydrogenase (NADP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLUDy"]}, "metabolites": {"akg_c": 1.0, "h2o_c": -1.0, "nadp_c": -1.0, "nadph_c": 1.0, "glu__L_c": -1.0, "h_c": 1.0, "nh4_c": 1.0}, "id": "GLUDy", "gene_reaction_rule": "ECD_01730"}, {"subsystem": "Glutamate Metabolism", "name": "Glutaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLUN"]}, "metabolites": {"glu__L_c": 1.0, "nh4_c": 1.0, "h2o_c": -1.0, "gln__L_c": -1.0}, "id": "GLUN", "gene_reaction_rule": "ECD_01782 or ECD_00436 or ECD_01481"}, {"subsystem": "Glutamate Metabolism", "name": "Glutaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLUNpp"]}, "metabolites": {"glu__L_p": 1.0, "gln__L_p": -1.0, "nh4_p": 1.0, "h2o_p": -1.0}, "id": "GLUNpp", "gene_reaction_rule": "ECD_02787"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Glutamine phosphoribosyldiphosphate amidotransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLUPRT"]}, "metabolites": {"pram_c": 1.0, "h2o_c": -1.0, "glu__L_c": 1.0, "ppi_c": 1.0, "prpp_c": -1.0, "gln__L_c": -1.0}, "id": "GLUPRT", "gene_reaction_rule": "ECD_02237"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Glutamate racemase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLUR"]}, "metabolites": {"glu__D_c": -1.0, "glu__L_c": 1.0}, "id": "GLUR", "gene_reaction_rule": "ECD_03852"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Glutamyl-tRNA reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLUTRR"]}, "metabolites": {"nadp_c": 1.0, "nadph_c": -1.0, "glu1sa_c": 1.0, "trnaglu_c": 1.0, "h_c": -1.0, "glutrna_c": -1.0}, "id": "GLUTRR", "gene_reaction_rule": "ECD_01185"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Glutamyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLUTRS"]}, "metabolites": {"atp_c": -1.0, "ppi_c": 1.0, "trnaglu_c": -1.0, "amp_c": 1.0, "glutrna_c": 1.0, "glu__L_c": -1.0}, "id": "GLUTRS", "gene_reaction_rule": "ECD_02306"}, {"subsystem": "Transport, Inner Membrane", "name": "L-glutamate transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLUabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "glu__L_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "glu__L_p": -1.0, "pi_c": 1.0}, "id": "GLUabcpp", "gene_reaction_rule": "ECD_00623 and ECD_00622 and ECD_00621 and gltL"}, {"subsystem": "Transport, Inner Membrane", "name": "L-glutamate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLUt2rpp"]}, "metabolites": {"glu__L_p": -1.0, "glu__L_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "GLUt2rpp", "gene_reaction_rule": "ECD_03949"}, {"subsystem": "Transport, Inner Membrane", "name": "Na+/glutamate symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLUt4pp"]}, "metabolites": {"na1_p": -1.0, "glu__L_p": -1.0, "glu__L_c": 1.0, "na1_c": 1.0}, "id": "GLUt4pp", "gene_reaction_rule": "ECD_03511"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-glutamate transport via diffusion (extracellular to 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(periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYALDtpp"]}, "metabolites": {"glyald_c": 1.0, "glyald_p": -1.0}, "id": "GLYALDtpp", "gene_reaction_rule": "ECD_03812"}, {"subsystem": "Glycine and Serine Metabolism", "name": "Glycine C-acetyltransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYAT"]}, "metabolites": {"coa_c": 1.0, "gly_c": -1.0, "accoa_c": -1.0, "2aobut_c": 1.0}, "id": "GLYAT", "gene_reaction_rule": "ECD_03475"}, {"subsystem": "Transport, Inner Membrane", "name": "Glycine betaine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYBabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "glyb_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "glyb_p": -1.0}, "id": "GLYBabcpp", "gene_reaction_rule": "ECD_02058 and ECD_02059 and ECD_02060 and ECD_02061"}, {"subsystem": "Transport, Inner Membrane", "name": "Glycine betaine 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"gene_reaction_rule": "ECD_03301 and ECD_03302 and ECD_03299 and ECD_03300"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glycerol-2-phosphate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYC2Ptex"]}, "metabolites": {"glyc2p_e": -1.0, "glyc2p_p": 1.0}, "id": "GLYC2Ptex", "gene_reaction_rule": "ECD_02142 or ECD_00238 or ECD_00933 or ECD_01348"}, {"subsystem": "Transport, Inner Membrane", "name": "Sn-Glycerol 3-phosphate transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYC3Pabcpp"]}, "metabolites": {"glyc3p_c": 1.0, "atp_c": -1.0, "h2o_c": -1.0, "glyc3p_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "GLYC3Pabcpp", "gene_reaction_rule": "ECD_03301 and ECD_03302 and ECD_03299 and ECD_03300"}, {"subsystem": "Transport, Inner Membrane", "name": "Glycerol-3-phosphate : phosphate antiporter (periplasm)", 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"gthrd_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "gthrd_c": 1.0}, "id": "GTHRDabcpp", "gene_reaction_rule": "ECD_00796 and ECD_00797 and ECD_00798 and ECD_00799"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glutathione transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GTHRDtex"]}, "metabolites": {"gthrd_e": -1.0, "gthrd_p": 1.0}, "id": "GTHRDtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Glutathione synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GTHS"]}, "metabolites": {"pi_c": 1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "glucys_c": -1.0, "gthrd_c": 1.0, "gly_c": -1.0}, "id": "GTHS", "gene_reaction_rule": "ECD_02777"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "GTP cyclohydrolase I", "upper_bound": 1000.0, 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"upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GTPDPK"]}, "metabolites": {"gdptp_c": 1.0, "gtp_c": -1.0, "amp_c": 1.0, "atp_c": -1.0, "h_c": 1.0}, "id": "GTPDPK", "gene_reaction_rule": "ECD_02629"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "GTP amine hydrolysis (spontaneous)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GTPHs"]}, "metabolites": {"h2o_c": -1.0, "xtp_c": 1.0, "gtp_c": -1.0, "h_c": -1.0, "nh4_c": 1.0}, "id": "GTPHs", "gene_reaction_rule": "s0001"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "GTP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GTPtex"]}, "metabolites": {"gtp_e": -1.0, "gtp_p": 1.0}, "id": "GTPtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Guanylate cyclase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GUACYC"]}, "metabolites": {"ppi_c": 1.0, "gtp_c": -1.0, "35cgmp_c": 1.0}, "id": "GUACYC", "gene_reaction_rule": ""}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Guanine deaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GUAD"]}, "metabolites": {"gua_c": -1.0, "h2o_c": -1.0, "h_c": -1.0, "xan_c": 1.0, "nh4_c": 1.0}, "id": "GUAD", "gene_reaction_rule": "ECD_02716"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Guanine phosphoribosyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GUAPRT"]}, "metabolites": {"ppi_c": 1.0, "gmp_c": 1.0, "gua_c": -1.0, "prpp_c": -1.0}, "id": "GUAPRT", "gene_reaction_rule": "ECD_00233 or ECD_00124"}, {"subsystem": "Transport, Inner Membrane", "name": "Guanine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GUAt2pp"]}, "metabolites": {"gua_p": -1.0, "gua_c": 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"name": "Glucuronate isomerase (D-galacturonate)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GUI2"]}, "metabolites": {"galur_c": -1.0, "tagur_c": 1.0}, "id": "GUI2", "gene_reaction_rule": "ECD_02961"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Glucuronate 1-phosphate phosphatase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GUR1PPpp"]}, "metabolites": {"pi_p": 1.0, "h2o_p": -1.0, "glcur1p_p": -1.0, "glcur_p": 1.0}, "id": "GUR1PPpp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Hydrogen peroxide transport via diffusion (external)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["H2O2tex"]}, "metabolites": {"h2o2_p": 1.0, "h2o2_e": -1.0}, "id": "H2O2tex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "H2O transport via diffusion 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"HEX7", "gene_reaction_rule": "ECD_00343"}, {"subsystem": "Transport, Inner Membrane", "name": "Hexanoate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["HEXt2rpp"]}, "metabolites": {"hxa_p": -1.0, "hxa_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "HEXt2rpp", "gene_reaction_rule": "ECD_02150"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Mercury (Hg+2) ABC transporter (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HG2abcpp"]}, "metabolites": {"h2o_c": -1.0, "hg2_p": 1.0, "atp_c": -1.0, "hg2_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "HG2abcpp", "gene_reaction_rule": "ECD_03318"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Mercury (Hg+2) transport out via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HG2t3pp"]}, "metabolites": {"hg2_c": -1.0, "hg2_p": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "HG2t3pp", "gene_reaction_rule": "ECD_03800"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Mercury (Hg+2) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["HG2tex"]}, "metabolites": {"hg2_p": 1.0, "hg2_e": -1.0}, "id": "HG2tex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Histidine Metabolism", "name": "Histidinol dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HISTD"]}, "metabolites": {"histd_c": -1.0, "h2o_c": -1.0, "his__L_c": 1.0, "h_c": 3.0, "nad_c": -2.0, "nadh_c": 2.0}, "id": "HISTD", "gene_reaction_rule": "ECD_01922"}, {"subsystem": "Histidine Metabolism", "name": "Histidinol-phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HISTP"]}, "metabolites": {"hisp_c": -1.0, "histd_c": 1.0, "h2o_c": -1.0, "pi_c": 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"metabolites": {"his__L_c": 1.0, "his__L_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "HISt2rpp", "gene_reaction_rule": "ECD_00111"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-histidine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["HIStex"]}, "metabolites": {"his__L_p": 1.0, "his__L_e": -1.0}, "id": "HIStex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HKNDDH"]}, "metabolites": {"h_c": 1.0, "hkndd_c": -1.0, "succ_c": 1.0, "h2o_c": -1.0, "op4en_c": 1.0}, "id": "HKNDDH", "gene_reaction_rule": "ECD_00303"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2-hydroxy-6-ketononotrienedioate hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": 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["HOMt2pp"]}, "metabolites": {"hom__L_c": -1.0, "hom__L_p": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "HOMt2pp", "gene_reaction_rule": "ECD_00780 or ECD_03703"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-homoserine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["HOMtex"]}, "metabolites": {"hom__L_p": 1.0, "hom__L_e": -1.0}, "id": "HOMtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "4-hydroxy-2-oxopentanoate aldolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HOPNTAL"]}, "metabolites": {"acald_c": 1.0, "pyr_c": 1.0, "4h2opntn_c": -1.0}, "id": "HOPNTAL", "gene_reaction_rule": "ECD_00306"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "6-hydroxymethyl-dihydropterin pyrophosphokinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": 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ECD_02421"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "ISC [4Fe-4S] Reduction", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["I4FE4SR"]}, "metabolites": {"fadh2_c": -1.0, "iscu_4fe4s_c": 1.0, "fad_c": 1.0, "iscu_2fe2s2_c": -1.0, "h_c": -2.0}, "id": "I4FE4SR", "gene_reaction_rule": "ECD_02421"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "ISC [4Fe-4S] Transfer", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["I4FE4ST"]}, "metabolites": {"iscu_4fe4s_c": -1.0, "iscu_c": 1.0, "4fe4s_c": 1.0, "h_c": -4.0}, "id": "I4FE4ST", "gene_reaction_rule": "ECD_02420 and ECD_02421"}, {"subsystem": "Citric Acid Cycle", "name": "Isocitrate dehydrogenase (NADP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ICDHyr"]}, "metabolites": {"akg_c": 1.0, "co2_c": 1.0, "icit_c": -1.0, "nadph_c": 1.0, "nadp_c": -1.0}, "id": "ICDHyr", "gene_reaction_rule": "ECD_01134"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Isochorismate synthase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ICHORS", "ICHORSi"]}, "metabolites": {"chor_c": -1.0, "ichor_c": 1.0}, "id": "ICHORS_copy1", "gene_reaction_rule": "ECD_02192"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Isochorismate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ICHORS", "ICHORSi"]}, "metabolites": {"chor_c": -1.0, "ichor_c": 1.0}, "id": "ICHORS_copy2", "gene_reaction_rule": "ECD_00560"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Isochorismatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ICHORT"]}, "metabolites": {"ichor_c": -1.0, "pyr_c": 1.0, "23ddhb_c": 1.0, "h2o_c": -1.0}, "id": "ICHORT", "gene_reaction_rule": "ECD_00562"}, {"subsystem": "Anaplerotic Reactions", "name": "Isocitrate lyase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ICL"]}, "metabolites": {"succ_c": 1.0, "icit_c": -1.0, "glx_c": 1.0}, "id": "ICL", "gene_reaction_rule": "ECD_03887"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "ISC Cysteine desulfuration", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ICYSDS"]}, "metabolites": {"cys__L_c": -1.0, "ala__L_c": 1.0, "iscssh_c": 1.0, "iscs_c": -1.0}, "id": "ICYSDS", "gene_reaction_rule": "ECD_02422"}, {"subsystem": "Alternate Carbon Metabolism", "name": "L-idonate 5-dehydrogenase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IDOND"]}, "metabolites": {"idon__L_c": 1.0, "nad_c": 1.0, "5dglcn_c": -1.0, "h_c": -1.0, "nadh_c": -1.0}, "id": "IDOND", "gene_reaction_rule": "ECD_04133"}, {"subsystem": "Alternate Carbon Metabolism", "name": "L-indonate 5-dehydrogenase (NADP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IDOND2"]}, "metabolites": {"idon__L_c": 1.0, "5dglcn_c": -1.0, "nadph_c": -1.0, "h_c": -1.0, "nadp_c": 1.0}, "id": "IDOND2", "gene_reaction_rule": "ECD_04133"}, {"subsystem": "Transport, Inner Membrane", "name": "L-idonate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IDONt2rpp"]}, "metabolites": {"idon__L_c": 1.0, "idon__L_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "IDONt2rpp", "gene_reaction_rule": "ECD_04131"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-idonate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IDONtex"]}, "metabolites": {"idon__L_p": 1.0, "idon__L_e": -1.0}, "id": "IDONtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Histidine Metabolism", "name": "Imidazole-glycerol-3-phosphate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IG3PS"]}, "metabolites": {"aicar_c": 1.0, "glu__L_c": 1.0, "eig3p_c": 1.0, "h_c": 1.0, "prlp_c": -1.0, "gln__L_c": -1.0}, "id": "IG3PS", "gene_reaction_rule": "ECD_01925 and ECD_01927"}, {"subsystem": "Histidine Metabolism", "name": "Imidazoleglycerol-phosphate dehydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IGPDH"]}, "metabolites": {"h2o_c": 1.0, "imacp_c": 1.0, "eig3p_c": -1.0}, "id": "IGPDH", "gene_reaction_rule": "ECD_01924"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Indole-3-glycerol-phosphate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IGPS"]}, "metabolites": {"h2o_c": 1.0, "co2_c": 1.0, "h_c": -1.0, "2cpr5p_c": -1.0, "3ig3p_c": 1.0}, "id": "IGPS", "gene_reaction_rule": "ECD_01236"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Isoleucine transaminase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ILETA"]}, "metabolites": {"akg_c": -1.0, "3mop_c": 1.0, "glu__L_c": 1.0, "ile__L_c": -1.0}, "id": "ILETA", "gene_reaction_rule": "ECD_03648"}, {"subsystem": "tRNA Charging", "name": "Isoleucyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ILETRS"]}, "metabolites": {"iletrna_c": 1.0, "trnaile_c": -1.0, "atp_c": -1.0, "ile__L_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0}, "id": "ILETRS", "gene_reaction_rule": "ECD_00030"}, {"subsystem": "Transport, Inner Membrane", "name": "L-isoleucine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ILEabcpp"]}, "metabolites": {"h2o_c": -1.0, "ile__L_p": -1.0, "atp_c": -1.0, "ile__L_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "ILEabcpp", "gene_reaction_rule": "ECD_03303 and ECD_03304 and ECD_03306 and ECD_03309 and ECD_03305"}, {"subsystem": "Transport, Inner Membrane", "name": "L-isoleucine reversible transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ILEt2rpp"]}, "metabolites": {"ile__L_c": 1.0, "ile__L_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "ILEt2rpp", "gene_reaction_rule": "ECD_00349"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-isoleucine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ILEtex"]}, "metabolites": {"ile__L_p": 1.0, "ile__L_e": -1.0}, "id": "ILEtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "IMP cyclohydrolase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IMPC"]}, "metabolites": {"h2o_c": -1.0, "fprica_c": 1.0, "imp_c": -1.0}, "id": "IMPC", "gene_reaction_rule": "ECD_03883"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "IMP dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IMPD"]}, "metabolites": {"xmp_c": 1.0, "h2o_c": -1.0, "h_c": 1.0, "nad_c": -1.0, "nadh_c": 1.0, "imp_c": -1.0}, "id": "IMPD", "gene_reaction_rule": "ECD_02400"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "IMP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IMPtex"]}, "metabolites": {"imp_e": -1.0, "imp_p": 1.0}, "id": "IMPtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Indole transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["INDOLEt2rpp"]}, "metabolites": {"indole_c": 1.0, "h_p": -1.0, "indole_p": -1.0, "h_c": 1.0}, "id": "INDOLEt2rpp", "gene_reaction_rule": "ECD_03028"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Indole transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["INDOLEtex"]}, "metabolites": {"indole_e": -1.0, "indole_p": 1.0}, "id": "INDOLEtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Na+/myo-inositol symporter (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["INOSTt4pp"]}, "metabolites": {"na1_p": -1.0, "na1_c": 1.0, "inost_c": 1.0, "inost_p": -1.0}, "id": "INOSTt4pp", "gene_reaction_rule": "ECD_03563"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Inosine hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["INSH"]}, "metabolites": {"h2o_c": -1.0, "hxan_c": 1.0, "rib__D_c": 1.0, "ins_c": -1.0}, "id": "INSH", "gene_reaction_rule": "ECD_00034"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Insosine kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["INSK"]}, "metabolites": {"adp_c": 1.0, "h_c": 1.0, "imp_c": 1.0, "atp_c": -1.0, "ins_c": -1.0}, "id": "INSK", "gene_reaction_rule": "ECD_00428"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Inositol transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["INSTtex"]}, "metabolites": {"inost_e": -1.0, "inost_p": 1.0}, "id": "INSTtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Inosine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["INSt2pp"]}, "metabolites": {"ins_p": -1.0, "h_c": 1.0, "h_p": -1.0, "ins_c": 1.0}, "id": "INSt2pp", "gene_reaction_rule": "ECD_02794"}, {"subsystem": "Transport, Outer Membrane", "name": "Inosine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["INStex"]}, "metabolites": {"ins_e": -1.0, "ins_p": 1.0}, "id": "INStex", "gene_reaction_rule": "ECD_00359"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Isopentenyl-diphosphate D-isomerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IPDDI"]}, "metabolites": {"dmpp_c": 1.0, "ipdp_c": -1.0}, "id": "IPDDI", "gene_reaction_rule": "ECD_02721"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (ipdp)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IPDPS"]}, "metabolites": {"h2o_c": 1.0, "ipdp_c": 1.0, "h2mb4p_c": -1.0, "h_c": -1.0, "nad_c": 1.0, "nadh_c": -1.0}, "id": "IPDPS", "gene_reaction_rule": "ECD_00033"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "3-isopropylmalate dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IPMD"]}, "metabolites": {"3c4mop_c": 1.0, "3c2hmp_c": -1.0, "nadh_c": 1.0, "h_c": 1.0, "nad_c": -1.0}, "id": "IPMD", "gene_reaction_rule": "ECD_00075"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "3-isopropylmalate dehydratase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IPPMIa"]}, "metabolites": {"2ippm_c": 1.0, "h2o_c": 1.0, "3c2hmp_c": -1.0}, "id": "IPPMIa", "gene_reaction_rule": "ECD_00073 and ECD_00074"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "2-isopropylmalate hydratase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IPPMIb"]}, "metabolites": {"2ippm_c": -1.0, "h2o_c": -1.0, "3c3hmp_c": 1.0}, "id": "IPPMIb", "gene_reaction_rule": "ECD_00073 and ECD_00074"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "2-isopropylmalate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IPPS"]}, "metabolites": {"h2o_c": -1.0, "3c3hmp_c": 1.0, "3mob_c": -1.0, "coa_c": 1.0, "h_c": 1.0, "accoa_c": -1.0}, "id": "IPPS", "gene_reaction_rule": "ECD_00076"}, {"subsystem": "Transport, Inner Membrane", "name": "Isethionate transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ISETACabcpp"]}, "metabolites": {"isetac_c": 1.0, "h2o_c": -1.0, "atp_c": -1.0, "isetac_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "ISETACabcpp", "gene_reaction_rule": "(ECD_00315 and ECD_00316 and ECD_00317) or (ECD_00940 and ECD_00937 and ECD_00938)"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Isethionate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ISETACtex"]}, "metabolites": {"isetac_p": 1.0, "isetac_e": -1.0}, "id": "ISETACtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "KDO(2)-lipid IV A transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["K2L4Aabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "kdo2lipid4_p": 1.0, "h_c": 1.0, "adp_c": 1.0, "kdo2lipid4_c": -1.0, "pi_c": 1.0}, "id": "K2L4Aabcpp", "gene_reaction_rule": "ECD_00918"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "KDO(2)-lipid IV A transport via ABC system (periplasm to extracellular)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["K2L4Aabctex"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "kdo2lipid4_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "kdo2lipid4_e": 1.0}, "id": "K2L4Aabctex", "gene_reaction_rule": "ECD_03065 and ECD_03066 and ECD_03064 and ECD_04127 and ECD_04128"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Ketol-acid reductoisomerase (2,3-dihydroxy-3-methylbutanoate)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["KARA1"]}, "metabolites": {"nadp_c": -1.0, "nadph_c": 1.0, "h_c": 1.0, "23dhmb_c": -1.0, "alac__S_c": 1.0}, "id": "KARA1", "gene_reaction_rule": "ECD_03652"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Ketol-acid reductoisomerase (2-Acetolactate)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["KARA2"]}, "metabolites": {"23dhmp_c": 1.0, "2ahbut_c": -1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0}, "id": "KARA2", "gene_reaction_rule": "ECD_03652"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Beta-ketoacyl-ACP synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["KAS14"]}, "metabolites": {"acACP_c": -1.0, "ACP_c": 1.0, "malACP_c": -1.0, "h_c": -1.0, "actACP_c": 1.0, "co2_c": 1.0}, "id": "KAS14", "gene_reaction_rule": "ECD_02248 or ECD_01091"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Beta-ketoacyl-ACP synthase (2)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["KAS15"]}, "metabolites": {"malACP_c": -1.0, "coa_c": 1.0, "h_c": -1.0, "accoa_c": -1.0, "actACP_c": 1.0, "co2_c": 1.0}, "id": "KAS15", "gene_reaction_rule": "ECD_01087"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "3-deoxy-manno-octulosonate cytidylyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["KDOCT2"]}, "metabolites": {"ctp_c": -1.0, "ckdo_c": 1.0, "ppi_c": 1.0, "kdo_c": -1.0}, "id": "KDOCT2", "gene_reaction_rule": "ECD_00922"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "3-deoxy-manno-octulosonate-8-phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["KDOPP"]}, "metabolites": {"kdo_c": 1.0, "kdo8p_c": -1.0, "h2o_c": -1.0, "pi_c": 1.0}, "id": "KDOPP", "gene_reaction_rule": "ECD_03063"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["KDOPS"]}, "metabolites": {"pep_c": -1.0, "kdo8p_c": 1.0, "h2o_c": -1.0, "pi_c": 1.0, "ara5p_c": -1.0}, "id": "KDOPS", "gene_reaction_rule": "ECD_01190"}, {"subsystem": "Alternate Carbon Metabolism", "name": "3-keto-L-gulonate 6-phosphate decarboxylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["KG6PDC"]}, "metabolites": {"3dhgulnp_c": -1.0, "xu5p__L_c": 1.0, "co2_c": 1.0, "h_c": -1.0}, "id": "KG6PDC", "gene_reaction_rule": "ECD_04063 or ECD_03433"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Potassium ABC transporter (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["Kabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "k_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "k_c": 1.0, "pi_c": 1.0}, "id": "Kabcpp", "gene_reaction_rule": "ECD_00655 and ECD_00654 and ECD_00653"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Potassium transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["Kt2pp"]}, "metabolites": {"k_p": -1.0, "k_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "Kt2pp", "gene_reaction_rule": "(ECD_01268 and ECD_03140 and ECD_03740) or ECD_01224 or (ECD_01268 and ECD_03140 and ECD_01339) or ECD_03631"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Potassium transport out via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["Kt3pp"]}, "metabolites": {"k_p": 1.0, "k_c": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "Kt3pp", "gene_reaction_rule": "ECD_01194 or ECD_00809 or ECD_03201 or ECD_00051"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Potassium transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["Ktex"]}, "metabolites": {"k_p": 1.0, "k_e": -1.0}, "id": "Ktex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Oxidative Phosphorylation", "name": "L-Lactate dehydrogenase (ubiquinone)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["L_DASH_LACD2"]}, "metabolites": {"q8h2_c": 1.0, "pyr_c": 1.0, "lac__L_c": -1.0, "q8_c": -1.0}, "id": "L_LACD2", "gene_reaction_rule": "ECD_03463 or (ECD_00262 and ECD_00263 and ECD_00264)"}, {"subsystem": "Oxidative Phosphorylation", "name": "L-Lactate dehydrogenase (menaquinone)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["L_DASH_LACD3"]}, "metabolites": {"lac__L_c": -1.0, "pyr_c": 1.0, "mqn8_c": -1.0, "mql8_c": 1.0}, "id": "L_LACD3", "gene_reaction_rule": "ECD_03463 or (ECD_00262 and ECD_00263 and ECD_00264)"}, {"subsystem": "Transport, Inner Membrane", "name": "L-lactate reversible transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["L_DASH_LACt2rpp"]}, "metabolites": {"lac__L_c": 1.0, "h_c": 1.0, "h_p": -1.0, "lac__L_p": -1.0}, "id": "L_LACt2rpp", "gene_reaction_rule": "ECD_03461 or ECD_02843"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-lactate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["L_DASH_LACtex"]}, "metabolites": {"lac__L_e": -1.0, "lac__L_p": 1.0}, "id": "L_LACtex", "gene_reaction_rule": "ECD_00933 or ECD_01348 or ECD_02142 or ECD_00238"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "4-amino-4-deoxy-L-arabinotransferase (LPS lipid A modification, periplasmic face of membrane))", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LA4NTpp"]}, "metabolites": {"uLa4n_p": -1.0, "acolipa_p": 1.0, "colipa_p": -1.0, "udcpp_p": 1.0}, "id": "LA4NTpp", "gene_reaction_rule": "ECD_02183"}, {"subsystem": "Alternate Carbon Metabolism", "name": "B-galactosidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LACZ"]}, "metabolites": {"lcts_c": -1.0, "glc__D_c": 1.0, "h2o_c": -1.0, "gal_c": 1.0}, "id": "LACZ", "gene_reaction_rule": "ECD_00298"}, {"subsystem": "Alternate Carbon Metabolism", "name": "B-galactosidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LACZpp"]}, "metabolites": {"gal_p": 1.0, "h2o_p": -1.0, "lcts_p": -1.0, "glc__D_p": 1.0}, "id": "LACZpp", "gene_reaction_rule": "ECD_02062"}, {"subsystem": "Murein Recycling", "name": "L-alanyl-gamma-D-glutamyl-meso-diaminopimelate hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LADGMDH"]}, "metabolites": {"LalaDglu_c": 1.0, "26dap__M_c": 1.0, "h2o_c": -1.0, "LalaDgluMdap_c": -1.0}, "id": "LADGMDH", "gene_reaction_rule": "ECD_01303"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-alanyl-D-glutamate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LALADGLUtex"]}, "metabolites": {"LalaDglu_p": 1.0, "LalaDglu_e": -1.0}, "id": "LALADGLUtex", "gene_reaction_rule": "ECD_02142 or ECD_01348 or ECD_00238 or ECD_00933"}, {"subsystem": "Transport, Inner Membrane", "name": "L-alanyl-D-glutamate transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LALADGLUtpp"]}, "metabolites": {"LalaDglu_p": -1.0, "LalaDglu_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "LALADGLUtpp", "gene_reaction_rule": "ECD_01604 or ECD_03345 or ECD_04001 or ECD_00669"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-alanyl-L-glutamate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LALALGLUtex"]}, "metabolites": {"LalaLglu_p": 1.0, "LalaLglu_e": -1.0}, "id": "LALALGLUtex", "gene_reaction_rule": "ECD_02142 or ECD_01348 or ECD_00238 or ECD_00933"}, {"subsystem": "Transport, Inner Membrane", "name": "L-alanyl-L-glutamate transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LALALGLUtpp"]}, "metabolites": {"LalaLglu_p": -1.0, "LalaLglu_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "LALALGLUtpp", "gene_reaction_rule": "ECD_01604 or ECD_03345 or ECD_04001 or ECD_00669"}, {"subsystem": "Methylglyoxal Metabolism", "name": "D-Lactaldehyde:NAD+ 1-oxidoreductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LALDO2x"]}, "metabolites": {"mthgxl_c": -1.0, "nadh_c": -1.0, "h_c": -1.0, "nad_c": 1.0, "lald__D_c": 1.0}, "id": "LALDO2x", "gene_reaction_rule": "ECD_03831"}, {"subsystem": "Methylglyoxal Metabolism", "name": "L-Lactaldehyde:NADP+ 1-oxidoreductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LALDO3"]}, "metabolites": {"nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0, "lald__L_c": 1.0, "mthgxl_c": -1.0}, "id": "LALDO3", "gene_reaction_rule": ""}, {"subsystem": "Murein Recycling", "name": "L-alanyl-gamma-L-glutamate peptidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LALGP"]}, "metabolites": {"glu__L_c": 1.0, "ala__L_c": 1.0, "LalaLglu_c": -1.0, "h2o_c": -1.0}, "id": "LALGP", "gene_reaction_rule": "ECD_00232"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Lactaldehyde dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LCADi"]}, "metabolites": {"h2o_c": -1.0, "lald__L_c": -1.0, "lac__L_c": 1.0, "h_c": 2.0, "nad_c": -1.0, "nadh_c": 1.0}, "id": "LCADi", "gene_reaction_rule": "ECD_01370"}, {"subsystem": "Methylglyoxal Metabolism", "name": "Lacaldehyde reductase (R-propane-1,2-diol forming)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LCARR"]}, "metabolites": {"nad_c": 1.0, "nadh_c": -1.0, "12ppd__R_c": 1.0, "lald__D_c": -1.0, "h_c": -1.0}, "id": "LCARR", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "Lacaldehyde reductase (S-propane-1,2-diol forming)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LCARS"]}, "metabolites": {"lald__L_c": -1.0, "nadh_c": -1.0, "12ppd__S_c": 1.0, "h_c": -1.0, "nad_c": 1.0}, "id": "LCARS", "gene_reaction_rule": "ECD_02644"}, {"subsystem": "Transport, Inner Membrane", "name": "Lactose transport via proton aniport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LCTSt3ipp"]}, "metabolites": {"lcts_c": -1.0, "lcts_p": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "LCTSt3ipp", "gene_reaction_rule": "ECD_02099 or ECD_00072 or ECD_01485"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Lactose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LCTStex"]}, "metabolites": {"lcts_p": 1.0, "lcts_e": -1.0}, "id": "LCTStex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Lactose transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LCTStpp"]}, "metabolites": {"lcts_c": 1.0, "lcts_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "LCTStpp", "gene_reaction_rule": "ECD_00297"}, {"subsystem": "Pyruvate Metabolism", "name": "D-lactate dehydrogenase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LDH_D"]}, "metabolites": {"pyr_c": 1.0, "nadh_c": 1.0, "lac__D_c": -1.0, "h_c": 1.0, "nad_c": -1.0}, "id": "LDH_D", "gene_reaction_rule": "ECD_02063 or ECD_01352"}, {"subsystem": "Oxidative Phosphorylation", "name": "D-lactate dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LDH_D2"]}, "metabolites": {"q8h2_c": 1.0, "pyr_c": 1.0, "lac__D_c": -1.0, "q8_c": -1.0}, "id": "LDH_D2", "gene_reaction_rule": "ECD_02063"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Leucine transaminase (irreversible)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LEUTAi"]}, "metabolites": {"akg_c": 1.0, "leu__L_c": 1.0, "4mop_c": -1.0, "glu__L_c": -1.0}, "id": "LEUTAi", "gene_reaction_rule": "ECD_03648 or ECD_03926"}, {"subsystem": "tRNA Charging", "name": "Leucyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LEUTRS"]}, "metabolites": {"leutrna_c": 1.0, "leu__L_c": -1.0, "atp_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0, "trnaleu_c": -1.0}, "id": "LEUTRS", "gene_reaction_rule": "ECD_00611"}, {"subsystem": "Transport, Inner Membrane", "name": "L-leucine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LEUabcpp"]}, "metabolites": {"leu__L_c": 1.0, "atp_c": -1.0, "h2o_c": -1.0, "leu__L_p": -1.0, "h_c": 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L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2ATG180"]}, "metabolites": {"apg180_c": 1.0, "pg180_c": -1.0, "2agpg180_c": -1.0, "g3pg_c": 1.0}, "id": "LPLIPAL2ATG180", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2ATG181"]}, "metabolites": {"apg181_c": 1.0, "g3pg_c": 1.0, "pg181_c": -1.0, "2agpg181_c": -1.0}, "id": "LPLIPAL2ATG181", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2E120"]}, "metabolites": {"ddca_c": 1.0, "h2o_c": -1.0, "2agpe120_c": -1.0, "h_c": 1.0, "g3pe_c": 1.0}, "id": "LPLIPAL2E120", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2E140"]}, "metabolites": {"h2o_c": -1.0, "ttdca_c": 1.0, "2agpe140_c": -1.0, "h_c": 1.0, "g3pe_c": 1.0}, "id": "LPLIPAL2E140", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2E141"]}, "metabolites": {"h2o_c": -1.0, "g3pe_c": 1.0, "h_c": 1.0, "ttdcea_c": 1.0, "2agpe141_c": -1.0}, "id": "LPLIPAL2E141", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2E160"]}, "metabolites": {"h2o_c": -1.0, "hdca_c": 1.0, "h_c": 1.0, "2agpe160_c": -1.0, "g3pe_c": 1.0}, "id": "LPLIPAL2E160", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2E161"]}, "metabolites": {"hdcea_c": 1.0, "h2o_c": -1.0, "g3pe_c": 1.0, "h_c": 1.0, "2agpe161_c": -1.0}, "id": "LPLIPAL2E161", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2E180"]}, "metabolites": {"2agpe180_c": -1.0, "h2o_c": -1.0, "ocdca_c": 1.0, "h_c": 1.0, "g3pe_c": 1.0}, "id": "LPLIPAL2E180", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2E181"]}, "metabolites": {"2agpe181_c": -1.0, "h2o_c": -1.0, "ocdcea_c": 1.0, "h_c": 1.0, "g3pe_c": 1.0}, "id": "LPLIPAL2E181", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2G120"]}, "metabolites": {"ddca_c": 1.0, "g3pg_c": 1.0, "h2o_c": -1.0, "2agpg120_c": -1.0, "h_c": 1.0}, "id": "LPLIPAL2G120", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2G140"]}, "metabolites": {"g3pg_c": 1.0, "h2o_c": -1.0, "ttdca_c": 1.0, "2agpg140_c": -1.0, "h_c": 1.0}, "id": "LPLIPAL2G140", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2G141"]}, "metabolites": {"g3pg_c": 1.0, "h2o_c": -1.0, "2agpg141_c": -1.0, "h_c": 1.0, "ttdcea_c": 1.0}, "id": "LPLIPAL2G141", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2G160"]}, "metabolites": {"2agpg160_c": -1.0, "g3pg_c": 1.0, "h2o_c": -1.0, "hdca_c": 1.0, "h_c": 1.0}, "id": "LPLIPAL2G160", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2G161"]}, "metabolites": {"hdcea_c": 1.0, "2agpg161_c": -1.0, "h2o_c": -1.0, "h_c": 1.0, "g3pg_c": 1.0}, "id": "LPLIPAL2G161", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2G180"]}, "metabolites": {"g3pg_c": 1.0, "h2o_c": -1.0, "h_c": 1.0, "2agpg180_c": -1.0, "ocdca_c": 1.0}, "id": "LPLIPAL2G180", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2G181"]}, "metabolites": {"ocdcea_c": 1.0, "h2o_c": -1.0, "2agpg181_c": -1.0, "h_c": 1.0, "g3pg_c": 1.0}, "id": "LPLIPAL2G181", "gene_reaction_rule": "ECD_03704"}, {"subsystem": "Glycine and Serine Metabolism", "name": "L-serine dehydrogenase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LSERDHr"]}, "metabolites": {"2amsa_c": 1.0, "ser__L_c": -1.0, "nadp_c": -1.0, "nadph_c": 1.0, "h_c": 1.0}, "id": "LSERDHr", "gene_reaction_rule": "ECD_01498"}, {"subsystem": "Threonine and Lysine Metabolism", "name": "Lysine decarboxylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LYSDC"]}, "metabolites": {"15dap_c": 1.0, "co2_c": 1.0, "lys__L_c": -1.0, "h_c": -1.0}, "id": "LYSDC", "gene_reaction_rule": "ECD_00184"}, {"subsystem": "tRNA Charging", "name": "Lysyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LYSTRS"]}, "metabolites": {"trnalys_c": -1.0, "lys__L_c": -1.0, "atp_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0, "lystrna_c": 1.0}, "id": "LYSTRS", "gene_reaction_rule": "ECD_04000 or ECD_02722"}, {"subsystem": "Transport, Inner Membrane", "name": "L-lysine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LYSabcpp"]}, "metabolites": {"h2o_c": -1.0, "lys__L_c": 1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "lys__L_p": -1.0, "pi_c": 1.0}, "id": "LYSabcpp", "gene_reaction_rule": "ECD_02235 and ECD_02232 and ECD_02231 and ECD_02233"}, {"subsystem": "Transport, Inner Membrane", "name": "L-lysine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LYSt2pp"]}, "metabolites": {"lys__L_c": 1.0, "h_c": 1.0, "h_p": -1.0, "lys__L_p": -1.0}, "id": "LYSt2pp", "gene_reaction_rule": "ECD_02085"}, {"subsystem": "Transport, Inner Membrane", "name": "L-lysine transport out via proton antiport (cytoplasm to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LYSt3pp"]}, "metabolites": {"lys__L_c": -1.0, "h_c": 1.0, "h_p": -1.0, "lys__L_p": 1.0}, "id": "LYSt3pp", "gene_reaction_rule": "ECD_02754"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-lysine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LYStex"]}, "metabolites": {"lys__L_e": -1.0, "lys__L_p": 1.0}, "id": "LYStex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Lyxose isomerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LYXI"]}, "metabolites": {"xylu__L_c": 1.0, "lyx__L_c": -1.0}, "id": "LYXI", "gene_reaction_rule": "ECD_03789"}, {"subsystem": "Transport, Inner Membrane", "name": "L-Lyxose transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LYXt2pp"]}, "metabolites": {"lyx__L_p": -1.0, "lyx__L_c": 1.0, "h_p": -1.0, "h_c": 1.0}, "id": "LYXt2pp", "gene_reaction_rule": "ECD_03793"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-Lyxose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LYXtex"]}, "metabolites": {"lyx__L_e": -1.0, "lyx__L_p": 1.0}, "id": "LYXtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Mannitol-1-phosphate 5-dehydrogenase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["M1PD"]}, "metabolites": {"h_c": 1.0, "nadh_c": 1.0, "mnl1p_c": -1.0, "nad_c": -1.0, "f6p_c": 1.0}, "id": "M1PD", "gene_reaction_rule": "ECD_03455"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Malonyl-ACP decarboxylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MACPD"]}, "metabolites": {"acACP_c": 1.0, "co2_c": 1.0, "malACP_c": -1.0, "h_c": -1.0}, "id": "MACPD", "gene_reaction_rule": "ECD_02248"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Malonyl-CoA methyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALCOAMT"]}, "metabolites": {"malcoame_c": 1.0, "amet_c": -1.0, "ahcys_c": 1.0, "malcoa_c": -1.0}, "id": "MALCOAMT", "gene_reaction_rule": "ECD_00744"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Malate decarboxylating oxidoreductase (decarboxylating)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALDDH"]}, "metabolites": {"nad_c": -1.0, "pyr_c": 1.0, "co2_c": 1.0, "mal__D_c": -1.0, "nadh_c": 1.0}, "id": "MALDDH", "gene_reaction_rule": "ECD_01770"}, {"subsystem": "Transport, Inner Membrane", "name": "D-Malate transport via proton symport (2 H) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALDt2_2pp"]}, "metabolites": {"mal__D_p": -1.0, "mal__D_c": 1.0, "h_c": 2.0, "h_p": -2.0}, "id": "MALDt2_2pp", "gene_reaction_rule": "ECD_03376"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-Malate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MALDtex"]}, "metabolites": {"mal__D_p": 1.0, "mal__D_e": -1.0}, "id": "MALDtex", "gene_reaction_rule": "ECD_02142 or ECD_01348 or ECD_00238 or ECD_00933"}, {"subsystem": "Anaplerotic Reactions", "name": "Malate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALS"]}, "metabolites": {"h2o_c": -1.0, "mal__L_c": 1.0, "glx_c": -1.0, "h_c": 1.0, "accoa_c": -1.0, "coa_c": 1.0}, "id": "MALS", "gene_reaction_rule": "ECD_03886 or ECD_02844"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Maltose O-acetyltransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MALTATr"]}, "metabolites": {"acmalt_c": 1.0, "malt_c": -1.0, "coa_c": 1.0, "accoa_c": -1.0}, "id": "MALTATr", "gene_reaction_rule": "ECD_00410"}, {"subsystem": "Transport, Inner Membrane", "name": "Maltohexaose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTHXabcpp"]}, "metabolites": {"h2o_c": -1.0, "malthx_c": 1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "malthx_p": -1.0, "pi_c": 1.0}, "id": "MALTHXabcpp", "gene_reaction_rule": "ECD_03906 and ECD_03905 and ECD_03904 and ECD_03907"}, {"subsystem": "Transport, Outer Membrane", "name": "Maltohexaose transport via diffusion (extracellular to periplasm) irreversible", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTHXtexi"]}, "metabolites": {"malthx_e": -1.0, "malthx_p": 1.0}, "id": "MALTHXtexi", "gene_reaction_rule": "ECD_03908"}, {"subsystem": "Transport, Inner Membrane", "name": "Maltopentaose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTPTabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "maltpt_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "maltpt_c": 1.0, "pi_c": 1.0}, "id": "MALTPTabcpp", "gene_reaction_rule": "ECD_03906 and ECD_03905 and ECD_03904 and ECD_03907"}, {"subsystem": "Transport, Outer Membrane", "name": "MaltopentaoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTPTtexi"]}, "metabolites": {"maltpt_p": 1.0, "maltpt_e": -1.0}, "id": "MALTPTtexi", "gene_reaction_rule": "ECD_03908"}, {"subsystem": "Transport, Inner Membrane", "name": "Maltotriose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTTRabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "malttr_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "malttr_c": 1.0}, "id": "MALTTRabcpp", "gene_reaction_rule": "ECD_03906 and ECD_03905 and ECD_03904 and ECD_03907"}, {"subsystem": "Transport, Outer Membrane", "name": "Maltotriose transport via diffusion (extracellular to periplasm) irreversible", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTTRtexi"]}, "metabolites": {"malttr_e": -1.0, "malttr_p": 1.0}, "id": "MALTTRtexi", "gene_reaction_rule": "ECD_03908"}, {"subsystem": "Transport, Inner Membrane", "name": "Maltotetraose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTTTRabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "maltttr_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "maltttr_p": -1.0}, "id": "MALTTTRabcpp", "gene_reaction_rule": "ECD_03906 and ECD_03905 and ECD_03904 and ECD_03907"}, {"subsystem": "Transport, Outer Membrane", "name": "MaltotetraoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTTTRtexi"]}, "metabolites": {"maltttr_e": -1.0, "maltttr_p": 1.0}, "id": "MALTTTRtexi", "gene_reaction_rule": "ECD_03908"}, {"subsystem": "Transport, Inner Membrane", "name": "Maltose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "malt_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "malt_c": 1.0, "pi_c": 1.0}, "id": "MALTabcpp", "gene_reaction_rule": "ECD_03906 and ECD_03905 and ECD_03904 and ECD_03907"}, {"subsystem": "Transport, Inner Membrane", "name": "Maltose transport via PEP:Pyr PTS (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTptspp"]}, "metabolites": {"pep_c": -1.0, "malt_p": -1.0, "malt6p_c": 1.0, "pyr_c": 1.0}, "id": "MALTptspp", "gene_reaction_rule": "ECD_02317 and ECD_01590 and ECD_02315 and ECD_02316"}, {"subsystem": "Transport, Outer Membrane", "name": "MaltoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTtexi"]}, "metabolites": {"malt_p": 1.0, "malt_e": -1.0}, "id": "MALTtexi", "gene_reaction_rule": "ECD_03908"}, {"subsystem": "Transport, Inner Membrane", "name": "Malate transport via proton symport (2 H) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALt2_2pp"]}, "metabolites": {"mal__L_p": -1.0, "mal__L_c": 1.0, "h_c": 2.0, "h_p": -2.0}, "id": "MALt2_2pp", "gene_reaction_rule": "ECD_03376"}, {"subsystem": "Transport, Inner Membrane", "name": "Malate transport via proton symport (3 H) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALt2_3pp"]}, "metabolites": {"mal__L_p": -1.0, "mal__L_c": 1.0, "h_c": 3.0, "h_p": -3.0}, "id": "MALt2_3pp", "gene_reaction_rule": "ECD_03994 or ECD_04008"}, {"subsystem": "Transport, Inner Membrane", "name": "L-malate transport out via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALt3pp"]}, "metabolites": {"mal__L_p": 1.0, "mal__L_c": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "MALt3pp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Malate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MALtex"]}, "metabolites": {"mal__L_p": 1.0, "mal__L_e": -1.0}, "id": "MALtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Mannose-1-phosphate guanylyltransferase (GDP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MAN1PT2"]}, "metabolites": {"man1p_c": -1.0, "pi_c": 1.0, "gdp_c": -1.0, "gdpmann_c": 1.0, "h_c": -1.0}, "id": "MAN1PT2", "gene_reaction_rule": "ECD_01955"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Mannose-6-phosphate isomerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MAN6PI"]}, "metabolites": {"man6p_c": -1.0, "f6p_c": 1.0}, "id": "MAN6PI", "gene_reaction_rule": "ECD_01582"}, {"subsystem": "Transport, Inner Membrane", "name": "Mannose-6-phosphate transport via phosphate antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MAN6Pt6_2pp"]}, "metabolites": {"man6p_p": -1.0, "pi_p": 2.0, "man6p_c": 1.0, "pi_c": -2.0}, "id": "MAN6Pt6_2pp", "gene_reaction_rule": "ECD_03550"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Mannose 6-phosphate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MAN6Ptex"]}, "metabolites": {"man6p_p": 1.0, "man6p_e": -1.0}, "id": "MAN6Ptex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Mannonate oxidoreductase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MANAO"]}, "metabolites": {"fruur_c": 1.0, "nadh_c": 1.0, "h_c": 1.0, "nad_c": -1.0, "mana_c": -1.0}, "id": "MANAO", "gene_reaction_rule": "ECD_04192"}, {"subsystem": 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"gene_reaction_rule": "ECD_00197 and ECD_00198 and ECD_00196"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-methionine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["METtex"]}, "metabolites": {"met__L_e": -1.0, "met__L_p": 1.0}, "id": "METtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Magnesium (Mg+2) transport in/out via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MG2t3_2pp"]}, "metabolites": {"mg2_p": -1.0, "h_c": -2.0, "h_p": 2.0, "mg2_c": 1.0}, "id": "MG2t3_2pp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Magnesium (Mg+2) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MG2tex"]}, "metabolites": {"mg2_e": -1.0, "mg2_p": 1.0}, "id": "MG2tex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Magnesium (+2) transport in via diffusion", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MG2tpp"]}, "metabolites": {"mg2_c": 1.0, "mg2_p": -1.0}, "id": "MG2tpp", "gene_reaction_rule": "ECD_03692"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Magnesium (Mg+2) ABC transporter (ubtake, periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MG2uabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "mg2_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "mg2_c": 1.0}, "id": "MG2uabcpp", "gene_reaction_rule": "ECD_04110"}, {"subsystem": "Methylglyoxal Metabolism", "name": "Methylglyoxal synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MGSA"]}, "metabolites": {"dhap_c": -1.0, "pi_c": 1.0, "mthgxl_c": 1.0}, "id": "MGSA", "gene_reaction_rule": "ECD_00967"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Myo-inositol 1-phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MI1PP"]}, "metabolites": {"mi1p__D_c": -1.0, "pi_c": 1.0, "inost_c": 1.0, "h2o_c": -1.0}, "id": "MI1PP", "gene_reaction_rule": "ECD_02425"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2-methylisocitrate dehydratase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MICITDr"]}, "metabolites": {"2mcacn_c": -1.0, "h2o_c": -1.0, "micit_c": 1.0}, "id": "MICITDr", "gene_reaction_rule": "ECD_00117"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Minocycline transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MINCYCtex"]}, "metabolites": {"mincyc_e": -1.0, "mincyc_p": 1.0}, "id": "MINCYCtex", "gene_reaction_rule": "ECD_01348 or ECD_02142 or ECD_00933 or ECD_00238"}, {"subsystem": "Transport, Outer Membrane", "name": "Minocycline transport via TolC system", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MINCYCtpp"]}, "metabolites": {"mincyc_e": 1.0, "mincyc_p": -1.0, "h_p": -1.0, "h_c": 1.0}, "id": "MINCYCtpp", "gene_reaction_rule": "ECD_00414 and ECD_02361 and ECD_02907"}, {"subsystem": "Transport, Outer Membrane", "name": "Myo-inositol phosphate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MINOHPtexi"]}, "metabolites": {"minohp_p": 1.0, "minohp_e": -1.0}, "id": "MINOHPtexi", "gene_reaction_rule": ""}, {"subsystem": "Murein Biosynthesis", "name": "Murein L,D-carboxypeptidase (murein5px4p) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLDCP1App"]}, "metabolites": {"h2o_p": -1.0, "murein3px4p_p": 1.0, "alaala_p": 1.0, "murein5px4p_p": -1.0}, "id": "MLDCP1App", "gene_reaction_rule": ""}, {"subsystem": "Murein Biosynthesis", "name": "Murein L,D-carboxypeptidase (murein4p4p) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLDCP1Bpp"]}, "metabolites": {"murein4p4p_p": -1.0, "ala__D_p": 1.0, "murein4p3p_p": 1.0, "h2o_p": -1.0}, "id": "MLDCP1Bpp", "gene_reaction_rule": ""}, {"subsystem": "Murein Biosynthesis", "name": "Murein L,D-carboxypeptidase (murein5p5p) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLDCP2App"]}, "metabolites": {"h2o_p": -1.0, "murein5p3p_p": 1.0, "alaala_p": 1.0, "murein5p5p_p": -1.0}, "id": "MLDCP2App", "gene_reaction_rule": ""}, {"subsystem": "Murein Biosynthesis", "name": "Murein L,D-carboxypeptidase (murein4p3p) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLDCP2Bpp"]}, "metabolites": {"h2o_p": -1.0, "murein3p3p_p": 1.0, "murein4p3p_p": -1.0, "ala__D_p": 1.0}, "id": "MLDCP2Bpp", "gene_reaction_rule": ""}, {"subsystem": "Murein Biosynthesis", "name": "Murein L,D-carboxypeptidase (murein5px3p) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLDCP3App"]}, "metabolites": {"h2o_p": -1.0, "murein3px3p_p": 1.0, "murein5px3p_p": -1.0, "alaala_p": 1.0}, "id": "MLDCP3App", "gene_reaction_rule": ""}, {"subsystem": "Murein Recycling", "name": "Murein L,D-endopeptidase (murein3px3p) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLDEP1pp"]}, "metabolites": {"murein3p3p_p": 1.0, "murein3px3p_p": -1.0, "h2o_p": -1.0}, "id": "MLDEP1pp", "gene_reaction_rule": ""}, {"subsystem": "Murein Recycling", "name": "Murein L,D-endopeptidase (murein5px3p) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLDEP2pp"]}, "metabolites": {"h2o_p": -1.0, "murein5px3p_p": -1.0, "murein5p3p_p": 1.0}, "id": "MLDEP2pp", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "Maltodextrin glucosidase (maltotriose)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLTG1"]}, "metabolites": {"glc__D_c": 1.0, "malt_c": 1.0, "h2o_c": -1.0, "malttr_c": -1.0}, "id": "MLTG1", "gene_reaction_rule": "ECD_00351"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Maltodextrin glucosidase (maltotetraose)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLTG2"]}, "metabolites": {"glc__D_c": 1.0, "h2o_c": -1.0, "malttr_c": 1.0, "maltttr_c": -1.0}, "id": "MLTG2", "gene_reaction_rule": "ECD_00351"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Maltodextrin glucosidase (maltopentaose)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLTG3"]}, "metabolites": {"glc__D_c": 1.0, "maltpt_c": -1.0, "h2o_c": -1.0, "maltttr_c": 1.0}, "id": "MLTG3", "gene_reaction_rule": "ECD_00351"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Maltodextrin glucosidase (maltohexaose)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLTG4"]}, "metabolites": {"maltpt_c": 1.0, "glc__D_c": 1.0, "h2o_c": -1.0, "malthx_c": -1.0}, "id": "MLTG4", "gene_reaction_rule": "ECD_00351"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Maltodextrin glucosidase (maltoheptaose)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLTG5"]}, "metabolites": {"glc__D_c": 1.0, "malthx_c": 1.0, "h2o_c": -1.0, "malthp_c": -1.0}, "id": "MLTG5", "gene_reaction_rule": "ECD_00351"}, {"subsystem": "Murein Recycling", "name": "Murein lytic transglycosylase (murein4p4p) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLTGY1pp"]}, "metabolites": {"murein4p4p_p": -1.0, "anhgm4p_p": 2.0}, "id": "MLTGY1pp", "gene_reaction_rule": "mltF or ECD_02793 or ECD_04268 or ECD_02664 or ECD_02551 or ECD_01168"}, {"subsystem": "Murein Recycling", "name": "Murein lytic transglycosylase (murein4p3p) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLTGY2pp"]}, "metabolites": {"murein4p3p_p": -1.0, "anhgm3p_p": 1.0, "anhgm4p_p": 1.0}, "id": "MLTGY2pp", "gene_reaction_rule": "ECD_01168 or mltF or ECD_02793 or ECD_04268 or ECD_02664 or ECD_02551"}, {"subsystem": "Murein Recycling", "name": "Murein lytic transglycosylase (murein3p3p) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLTGY3pp"]}, "metabolites": {"murein3p3p_p": -1.0, "anhgm3p_p": 2.0}, "id": "MLTGY3pp", "gene_reaction_rule": "ECD_01168 or ECD_02793 or mltF or ECD_04268 or ECD_02664 or ECD_02551"}, {"subsystem": "Murein Recycling", "name": "Murein lytic transglycosylase (murein4px4p4p) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLTGY4pp"]}, "metabolites": {"murein4px4p_p": 1.0, "murein4px4p4p_p": -1.0, "anhgm4p_p": 1.0}, "id": "MLTGY4pp", "gene_reaction_rule": "ECD_02551 or ECD_01168 or ECD_02793 or mltF or ECD_04268 or ECD_02664"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Maltodextrin phosphorylase (maltopentaose)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MLTP1"]}, "metabolites": {"maltpt_c": -1.0, "pi_c": -1.0, "g1p_c": 1.0, "maltttr_c": 1.0}, "id": "MLTP1", "gene_reaction_rule": "ECD_03269"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Maltodextrin phosphorylase (maltohexaose)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MLTP2"]}, "metabolites": {"maltpt_c": 1.0, "pi_c": -1.0, "malthx_c": -1.0, "g1p_c": 1.0}, "id": "MLTP2", "gene_reaction_rule": "ECD_03269"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Maltodextrin phosphorylase (maltoheptaose)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MLTP3"]}, "metabolites": {"malthp_c": -1.0, "pi_c": -1.0, "malthx_c": 1.0, "g1p_c": 1.0}, "id": "MLTP3", "gene_reaction_rule": "ECD_03269"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Methylmalonyl-CoA decarboxylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MMCD"]}, "metabolites": {"mmcoa__S_c": -1.0, "co2_c": 1.0, "h_c": -1.0, "ppcoa_c": 1.0}, "id": "MMCD", "gene_reaction_rule": "ECD_02750"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "S-methyl-L-methionine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MMETtex"]}, "metabolites": {"mmet_e": -1.0, "mmet_p": 1.0}, "id": "MMETtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Methylmalonyl-CoA mutase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MMM"]}, "metabolites": {"mmcoa__S_c": 1.0, "succoa_c": -1.0}, "id": "MMM", "gene_reaction_rule": "ECD_02748"}, {"subsystem": "Inorganic 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via PEP:Pyr PTS (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MNLptspp"]}, "metabolites": {"pep_c": -1.0, "pyr_c": 1.0, "mnl_p": -1.0, "mnl1p_c": 1.0}, "id": "MNLptspp", "gene_reaction_rule": "ECD_03454 and ECD_02315 and ECD_02316"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Mannitol transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MNLtex"]}, "metabolites": {"mnl_p": 1.0, "mnl_e": -1.0}, "id": "MNLtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "D-mannonate hydrolyase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MNNH"]}, "metabolites": {"h2o_c": 1.0, "2ddglcn_c": 1.0, "mana_c": -1.0}, "id": "MNNH", "gene_reaction_rule": "ECD_04191"}, {"subsystem": "Transport, Inner Membrane", "name": "Manganese (Mn+2) transport in via proton 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"Lipopolysaccharide Biosynthesis / Recycling", "name": "3-deoxy-D-manno-octulosonic acid transferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MOAT"]}, "metabolites": {"kdolipid4_c": 1.0, "cmp_c": 1.0, "ckdo_c": -1.0, "h_c": 1.0, "lipidA_c": -1.0}, "id": "MOAT", "gene_reaction_rule": "ECD_03490"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "3-deoxy-D-manno-octulosonic acid transferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MOAT2"]}, "metabolites": {"kdo2lipid4_c": 1.0, "ckdo_c": -1.0, "cmp_c": 1.0, "h_c": 1.0, "kdolipid4_c": -1.0}, "id": "MOAT2", "gene_reaction_rule": "ECD_03490"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Molybdate transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MOBDabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "mobd_c": 1.0, "mobd_p": -1.0, "adp_c": 1.0, "pi_c": 1.0, "h_c": 1.0}, "id": "MOBDabcpp", "gene_reaction_rule": "(ECD_02322 and ECD_02324 and ECD_02323 and ECD_03802) or (ECD_02322 and ECD_02325 and ECD_02324 and ECD_02323)"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Molybdate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MOBDtex"]}, "metabolites": {"mobd_e": -1.0, "mobd_p": 1.0}, "id": "MOBDtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Molybdopterin cytidine dinucleotide synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MOCDS"]}, "metabolites": {"ctp_c": -1.0, "mococdp_c": 1.0, "ppi_c": 1.0, "h_c": -1.0, "moco_c": -1.0}, "id": "MOCDS", "gene_reaction_rule": "ECD_02710"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Molybdenum cofactor synthase", "upper_bound": 1000.0, 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"name": "Malate oxidase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MOX"]}, "metabolites": {"h2o2_c": 1.0, "mal__L_c": -1.0, "oaa_c": 1.0, "o2_c": -1.0}, "id": "MOX", "gene_reaction_rule": ""}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Molybdopterin adenylyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MPTAT"]}, "metabolites": {"mpt_c": -1.0, "ppi_c": 1.0, "h_c": -1.0, "atp_c": -1.0, "mptamp_c": 1.0}, "id": "MPTAT", "gene_reaction_rule": "ECD_00009"}, {"subsystem": "Murein Biosynthesis", "name": "Murein polymerizing transglycosylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MPTG"]}, "metabolites": {"udcpdp_c": 2.0, "uaagmda_c": -2.0, "h_c": 2.0, "murein5p5p_p": 1.0}, "id": "MPTG", "gene_reaction_rule": "(ECD_03248 and ECD_01065) or (ECD_00148 and ECD_01065) or (ECD_01065 and ECD_02411)"}, {"subsystem": "Murein Biosynthesis", "name": "Murein 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"nadph_c": 1.0, "methf_c": 1.0, "mlthf_c": -1.0}, "id": "MTHFD", "gene_reaction_rule": "ECD_00479"}, {"subsystem": "Folate Metabolism", "name": "5,10-methylenetetrahydrofolate reductase (NADH)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MTHFR2"]}, "metabolites": {"mlthf_c": -1.0, "nadh_c": -1.0, "5mthf_c": 1.0, "nad_c": 1.0, "h_c": -2.0}, "id": "MTHFR2", "gene_reaction_rule": "ECD_03827"}, {"subsystem": "Methionine Metabolism", "name": "(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MTHTHFSs"]}, "metabolites": {"h2o_c": -1.0, "mththf_c": 1.0, "mdhdhf_c": -1.0}, "id": "MTHTHFSs", "gene_reaction_rule": "s0001"}, {"subsystem": "Glycine and Serine Metabolism", "name": "N-methyltryptophan oxidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MTRPOX"]}, "metabolites": {"o2_c": -1.0, "h2o_c": -1.0, "Nmtrp_c": -1.0, 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dehydrogenase (ubiquinone-8 )", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADH5"]}, "metabolites": {"q8h2_c": 1.0, "nadh_c": -1.0, "q8_c": -1.0, "nad_c": 1.0, "h_c": -1.0}, "id": "NADH5", "gene_reaction_rule": "ECD_01105"}, {"subsystem": "Oxidative Phosphorylation", "name": "NADH dehydrogenase (demethylmenaquinone-8 & 0 protons)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADH9"]}, "metabolites": {"nadh_c": -1.0, "2dmmql8_c": 1.0, "2dmmq8_c": -1.0, "nad_c": 1.0, "h_c": -1.0}, "id": "NADH9", "gene_reaction_rule": "ECD_01105"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "NAD kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADK"]}, "metabolites": {"adp_c": 1.0, "nadp_c": 1.0, "nad_c": -1.0, "atp_c": -1.0, "h_c": 1.0}, "id": "NADK", "gene_reaction_rule": "ECD_02503"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "NAD nucleosidase", 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"lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADPHQR4"]}, "metabolites": {"nadp_c": 1.0, "nadph_c": -1.0, "2dmmq8_c": -1.0, "2dmmql8_c": 1.0, "h_c": -1.0}, "id": "NADPHQR4", "gene_reaction_rule": "ECD_02900"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "NADP phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADPPPS"]}, "metabolites": {"h2o_c": -1.0, "nadp_c": -1.0, "pi_c": 1.0, "nad_c": 1.0}, "id": "NADPPPS", "gene_reaction_rule": ""}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "NAD synthase (nh3)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADS1"]}, "metabolites": {"dnad_c": -1.0, "atp_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0, "nad_c": 1.0, "nh4_c": -1.0, "h_c": 1.0}, "id": "NADS1", "gene_reaction_rule": "ECD_01709"}, {"subsystem": "Oxidative Phosphorylation", "name": "NAD transhydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": 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"Nucleoside-diphosphate kinase (ATP:dTDP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NDPK4"]}, "metabolites": {"dtdp_c": -1.0, "dttp_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "NDPK4", "gene_reaction_rule": "ECD_00425 or ECD_02410"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Nucleoside-diphosphate kinase (ATP:dGDP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NDPK5"]}, "metabolites": {"dgtp_c": 1.0, "dgdp_c": -1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "NDPK5", "gene_reaction_rule": "ECD_00425 or ECD_02410"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Nucleoside-diphosphate kinase (ATP:dUDP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NDPK6"]}, "metabolites": {"dutp_c": 1.0, "dudp_c": -1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "NDPK6", "gene_reaction_rule": "ECD_02410 or ECD_00425"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Nucleoside-diphosphate kinase (ATP:dCDP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NDPK7"]}, "metabolites": {"dctp_c": 1.0, "adp_c": 1.0, "atp_c": -1.0, "dcdp_c": -1.0}, "id": "NDPK7", "gene_reaction_rule": "ECD_00425 or ECD_02410"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Nucleoside-diphosphate kinase (ATP:dADP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NDPK8"]}, "metabolites": {"datp_c": 1.0, "atp_c": -1.0, "adp_c": 1.0, "dadp_c": -1.0}, "id": "NDPK8", "gene_reaction_rule": "ECD_00425 or ECD_02410"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Ammonia transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NH4tex"]}, "metabolites": {"nh4_e": -1.0, "nh4_p": 1.0}, "id": "NH4tex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Ammonia reversible transport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NH4tpp"]}, "metabolites": {"nh4_c": 1.0, "nh4_p": -1.0}, "id": "NH4tpp", "gene_reaction_rule": "ECD_00403 or s0001"}, {"subsystem": "Nitrogen Metabolism", "name": "NADH:flavorubredoxin oxidoreductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NHFRBO"]}, "metabolites": {"h2o_c": 1.0, "h_c": -1.0, "nad_c": 1.0, "no_c": -2.0, "n2o_c": 1.0, "nadh_c": -1.0}, "id": "NHFRBO", "gene_reaction_rule": "ECD_02560 and ECD_02561"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Nickle (Ni+2) ABC transporter (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NI2abcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "ni2_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "ni2_p": 1.0}, "id": "NI2abcpp", "gene_reaction_rule": "ECD_03318"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Nickle (Ni+2) transport out via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NI2t3pp"]}, "metabolites": {"ni2_c": -1.0, "h_c": 1.0, "h_p": -1.0, "ni2_p": 1.0}, "id": "NI2t3pp", "gene_reaction_rule": "ECD_03800 or ECD_00705"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Nickel transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NI2tex"]}, "metabolites": {"ni2_e": -1.0, "ni2_p": 1.0}, "id": "NI2tex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Nickel (+2) transport in via permease (no H+)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NI2tpp"]}, "metabolites": {"ni2_c": 1.0, "ni2_p": -1.0}, "id": "NI2tpp", "gene_reaction_rule": "ECD_03692"}, {"subsystem": "Inorganic Ion 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"h2o_c": -1.0, "nmn_c": -1.0, "nh4_c": 1.0}, "id": "NMNDA", "gene_reaction_rule": ""}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "NMN nucleosidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NMNN"]}, "metabolites": {"h_c": 1.0, "r5p_c": 1.0, "nmn_c": -1.0, "h2o_c": -1.0, "ncam_c": 1.0}, "id": "NMNN", "gene_reaction_rule": ""}, {"subsystem": "Transport, Inner Membrane", "name": "NMN permease (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NMNPtpp"]}, "metabolites": {"nmn_c": 1.0, "nmn_p": -1.0}, "id": "NMNPtpp", "gene_reaction_rule": "ECD_00704"}, {"subsystem": "Transport, Inner Membrane", "name": "NMN transport via NMN glycohydrolase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NMNt7pp"]}, "metabolites": {"h2o_c": -1.0, "ncam_c": 1.0, "r5p_c": 1.0, "h_c": 1.0, "nmn_p": -1.0}, "id": "NMNt7pp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "NMN transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NMNtex"]}, "metabolites": {"nmn_e": -1.0, "nmn_p": 1.0}, "id": "NMNtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Nicotinamidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NNAM"]}, "metabolites": {"h2o_c": -1.0, "ncam_c": -1.0, "nh4_c": 1.0, "nac_c": 1.0}, "id": "NNAM", "gene_reaction_rule": "ECD_01737"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Nicotinate-nucleotide adenylyltransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NNATr"]}, "metabolites": {"nicrnt_c": -1.0, "dnad_c": 1.0, "ppi_c": 1.0, "h_c": -1.0, "atp_c": -1.0}, "id": "NNATr", "gene_reaction_rule": "ECD_00608"}, {"subsystem": "Cofactor and Prosthetic 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-1.0}, "id": "NO2t2rpp", "gene_reaction_rule": "ECD_03218 or ECD_01201"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Nitrite transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NO2tex"]}, "metabolites": {"no2_e": -1.0, "no2_p": 1.0}, "id": "NO2tex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Nitrogen Metabolism", "name": "Nitrate reductase (Ubiquinol-8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NO3R1bpp"]}, "metabolites": {"h2o_p": 1.0, "q8h2_c": -1.0, "no3_p": -1.0, "no2_p": 1.0, "q8_c": 1.0}, "id": "NO3R1bpp", "gene_reaction_rule": "(ECD_02130 and ECD_02133) and ECD_02129 and ECD_02132 and ECD_02131"}, {"subsystem": "Oxidative Phosphorylation", "name": "Nitrate reductase (Ubiquinol-8) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NO3R1pp"]}, "metabolites": 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ECD_01426) or (ECD_01202 and ECD_01203 and ECD_01204 and ECD_01205)"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Nitrate transport in via nitrite antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NO3t7pp"]}, "metabolites": {"no3_p": -1.0, "no2_p": 1.0, "no2_c": -1.0, "no3_c": 1.0}, "id": "NO3t7pp", "gene_reaction_rule": "ECD_01201 or ECD_01427"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Nitrate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NO3tex"]}, "metabolites": {"no3_e": -1.0, "no3_p": 1.0}, "id": "NO3tex", "gene_reaction_rule": "ECD_01348 or ECD_00238 or ECD_00933 or ECD_02142"}, {"subsystem": "Nitrogen Metabolism", "name": "Nitric oxide dioxygenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NODOx"]}, "metabolites": {"o2_c": -2.0, "no3_c": 2.0, "h_c": 1.0, "nad_c": 1.0, 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"Guanosine-3',5'-bis(diphosphate) 3'-diphosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PPGPPDP"]}, "metabolites": {"ppgpp_c": -1.0, "ppi_c": 1.0, "gdp_c": 1.0, "h2o_c": -1.0}, "id": "PPGPPDP", "gene_reaction_rule": "ECD_03507"}, {"subsystem": "Oxidative Phosphorylation", "name": "Polyphosphate kinase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["PPK2r"]}, "metabolites": {"pppi_c": 1.0, "ppi_c": -1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "PPK2r", "gene_reaction_rule": "ECD_02393"}, {"subsystem": "Oxidative Phosphorylation", "name": "Polyphosphate kinase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["PPKr"]}, "metabolites": {"ppi_c": 1.0, "pi_c": -1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "PPKr", "gene_reaction_rule": "ECD_02393"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Phosphopentomutase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": 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{"34hpp_c": 1.0, "nadh_c": 1.0, "co2_c": 1.0, "pphn_c": -1.0, "nad_c": -1.0}, "id": "PPND", "gene_reaction_rule": "ECD_02489"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Prephenate dehydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PPNDH"]}, "metabolites": {"pphn_c": -1.0, "phpyr_c": 1.0, "h2o_c": 1.0, "co2_c": 1.0, "h_c": -1.0}, "id": "PPNDH", "gene_reaction_rule": "ECD_02488"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Protoporphyrinogen oxidase (aerobic)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PPPGO"]}, "metabolites": {"o2_c": -1.5, "h2o_c": 3.0, "pppg9_c": -1.0, "ppp9_c": 1.0}, "id": "PPPGO", "gene_reaction_rule": "ECD_03741"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Protoporphyrinogen oxidase (anaerobic)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PPPGO3"]}, "metabolites": {"ppp9_c": 1.0, "succ_c": 3.0, "fum_c": -3.0, "pppg9_c": -1.0}, "id": "PPPGO3", "gene_reaction_rule": "ECD_03741"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Phenylpropanoate Dioxygenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PPPNDO"]}, "metabolites": {"o2_c": -1.0, "pppn_c": -1.0, "h_c": -1.0, "nad_c": 1.0, "cechddd_c": 1.0, "nadh_c": -1.0}, "id": "PPPNDO", "gene_reaction_rule": "ECD_02430 and ECD_02431 and ECD_02432 and ECD_02434"}, {"subsystem": "Transport, Inner Membrane", "name": "3-phenylpropionate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["PPPNt2rpp"]}, "metabolites": {"pppn_p": -1.0, "pppn_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "PPPNt2rpp", "gene_reaction_rule": "ECD_02428"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "3-phenylpropionate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, 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"notes": {"original_bigg_ids": ["PPTtex"]}, "metabolites": {"ppt_e": -1.0, "ppt_p": 1.0}, "id": "PPTtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Phosphoribosylglycinamide synthase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["PRAGSr"]}, "metabolites": {"pram_c": -1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "gar_c": 1.0, "pi_c": 1.0, "gly_c": -1.0}, "id": "PRAGSr", "gene_reaction_rule": "ECD_03882"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Phosphoribosylaminoimidazole synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PRAIS"]}, "metabolites": {"atp_c": -1.0, "air_c": 1.0, "h_c": 2.0, "adp_c": 1.0, "fpram_c": -1.0, "pi_c": 1.0}, "id": "PRAIS", "gene_reaction_rule": "ECD_02391"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Phosphoribosylanthranilate isomerase 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"lower_bound": -1000.0, "notes": {"original_bigg_ids": ["RMNtex"]}, "metabolites": {"rmn_p": 1.0, "rmn_e": -1.0}, "id": "RMNtex", "gene_reaction_rule": "ECD_02142 or ECD_00238 or ECD_00933 or ECD_01348"}, {"subsystem": "Transport, Inner Membrane", "name": "L-rhamnose transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["RMNtpp"]}, "metabolites": {"rmn_c": 1.0, "rmn_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "RMNtpp", "gene_reaction_rule": "ECD_03793"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Rhamnulose-1-phosphate aldolase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["RMPA"]}, "metabolites": {"dhap_c": 1.0, "lald__L_c": 1.0, "rml1p_c": -1.0}, "id": "RMPA", "gene_reaction_rule": "ECD_03788"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Ribonucleoside-diphosphate reductase (ADP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["RNDR1"]}, 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{"subsystem": "Nucleotide Salvage Pathway", "name": "Ribonucleoside-diphosphate reductase (UDP) (glutaredoxin)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["RNDR4b"]}, "metabolites": {"grxrd_c": -1.0, "grxox_c": 1.0, "udp_c": -1.0, "dudp_c": 1.0, "h2o_c": 1.0}, "id": "RNDR4b", "gene_reaction_rule": "(ECD_00854 and (ECD_02531 and ECD_02532)) or (ECD_01060 and (ECD_02531 and ECD_02532)) or (ECD_03468 and (ECD_02531 and ECD_02532)) or (ECD_01624 and (ECD_02531 and ECD_02532))"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Ribonucleoside-triphosphate reductase (ATP) (flavodoxin)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["RNTR1c2"]}, "metabolites": {"h2o_c": 1.0, "atp_c": -1.0, "datp_c": 1.0, "flxr_c": -2.0, "h_c": -2.0, "flxso_c": 2.0}, "id": "RNTR1c2", "gene_reaction_rule": "(ECD_00641 and ECD_03809 and ECD_04106 and ECD_04105) or (ECD_02727 and ECD_03809 and ECD_04106 and ECD_04105) or (ECD_00641 and ECD_04106) 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["SHCHCS3"]}, "metabolites": {"pyr_c": 1.0, "2shchc_c": 1.0, "2sephchc_c": -1.0}, "id": "SHCHCS3", "gene_reaction_rule": "ECD_02190"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Sirohydrochlorin dehydrogenase (NAD)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SHCHD2"]}, "metabolites": {"dscl_c": -1.0, "nadh_c": 1.0, "h_c": 1.0, "nad_c": -1.0, "scl_c": 1.0}, "id": "SHCHD2", "gene_reaction_rule": "ECD_03219"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Sirohydrochlorin ferrochelatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SHCHF"]}, "metabolites": {"fe2_c": -1.0, "sheme_c": 1.0, "scl_c": -1.0, "h_c": 3.0}, "id": "SHCHF", "gene_reaction_rule": "ECD_03219"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Shikimate dehydrogenase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["SHK3Dr"]}, "metabolites": 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"Succinate dehydrogenase (irreversible)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SUCDi"]}, "metabolites": {"q8h2_c": 1.0, "succ_c": -1.0, "fum_c": 1.0, "q8_c": -1.0}, "id": "SUCDi", "gene_reaction_rule": "ECD_00681 and ECD_00682 and ECD_00683 and ECD_00684"}, {"subsystem": "Transport, Inner Membrane", "name": "Succinate:fumarate antiporter (periplasm)", "upper_bound": 0.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SUCFUMtpp"]}, "metabolites": {"fum_p": -1.0, "succ_p": 1.0, "succ_c": -1.0, "fum_c": 1.0}, "id": "SUCFUMtpp", "gene_reaction_rule": "ECD_03994 or ECD_00591 or ECD_04008"}, {"subsystem": "Transport, Inner Membrane", "name": "Succinate:malate antiporter (periplasm)", "upper_bound": 0.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SUCMALtpp"]}, "metabolites": {"succ_p": 1.0, "mal__L_c": 1.0, "succ_c": -1.0, "mal__L_p": -1.0}, "id": "SUCMALtpp", "gene_reaction_rule": "ECD_04008 or ECD_03994 or ECD_00591"}, {"subsystem": "Citric Acid Cycle", "name": "Succinyl-CoA synthetase (ADP-forming)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["SUCOAS"]}, "metabolites": {"atp_c": -1.0, "succoa_c": 1.0, "succ_c": -1.0, "coa_c": -1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "SUCOAS", "gene_reaction_rule": "ECD_00687 and ECD_00688"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Sucrose transport transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["SUCRtex"]}, "metabolites": {"sucr_p": 1.0, "sucr_e": -1.0}, "id": "SUCRtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Succinate:D-tartrate antiporter (periplasm)", "upper_bound": 0.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SUCTARTtpp"]}, "metabolites": {"tartr__D_p": -1.0, "succ_p": 1.0, "succ_c": -1.0, "tartr__D_c": 1.0}, "id": "SUCTARTtpp", 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["SULFACtex"]}, "metabolites": {"sulfac_p": 1.0, "sulfac_e": -1.0}, "id": "SULFACtex", "gene_reaction_rule": "ECD_01348 or ECD_02142 or ECD_00238 or ECD_00933"}, {"subsystem": "Cysteine Metabolism", "name": "Sulfite reductase (NADPH2)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SULRi"]}, "metabolites": {"h2o_c": 3.0, "nadp_c": 3.0, "nadph_c": -3.0, "so3_c": -1.0, "h2s_c": 1.0, "h_c": -5.0}, "id": "SULRi", "gene_reaction_rule": "ECD_02608 and ECD_02609"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Sulfate transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SULabcpp"]}, "metabolites": {"so4_p": -1.0, "atp_c": -1.0, "h2o_c": -1.0, "so4_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "SULabcpp", "gene_reaction_rule": "(ECD_02322 and ECD_02325 and ECD_02324 and ECD_02323) or (ECD_02322 and ECD_02324 and ECD_02323 and ECD_03802)"}, {"subsystem": "Cell Envelope 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["THRt2rpp"]}, "metabolites": {"thr__L_p": -1.0, "thr__L_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "THRt2rpp", "gene_reaction_rule": "ECD_02983"}, {"subsystem": "Transport, Inner Membrane", "name": "L-threonine  via sodium symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THRt4pp"]}, "metabolites": {"na1_p": -1.0, "thr__L_p": -1.0, "thr__L_c": 1.0, "na1_c": 1.0}, "id": "THRt4pp", "gene_reaction_rule": "ECD_02958"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-threonine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["THRtex"]}, "metabolites": {"thr__L_p": 1.0, "thr__L_e": -1.0}, "id": "THRtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Thymine transport out via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THYMt3pp"]}, "metabolites": {"thym_c": -1.0, "thym_p": 1.0, "h_p": -1.0, "h_c": 1.0}, "id": "THYMt3pp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Thymine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["THYMtex"]}, "metabolites": {"thym_e": -1.0, "thym_p": 1.0}, "id": "THYMtex", "gene_reaction_rule": "ECD_00933 or ECD_01348 or ECD_02142 or ECD_00238"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Thiazole phosphate synthesis", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THZPSN3"]}, "metabolites": {"h2o_c": 2.0, "nadp_c": 1.0, "nadph_c": -1.0, "iscssh_c": -1.0, "atp_c": -1.0, "4mpetz_c": 1.0, "ppi_c": 1.0, "dhgly_c": -1.0, "iscs_c": 1.0, "dxyl5p_c": -1.0, "h_c": -1.0, "co2_c": 1.0, "amp_c": 1.0}, "id": "THZPSN3", "gene_reaction_rule": "ECD_02422 and ECD_03869 and ECD_03866 and ECD_00371 and ECD_03868"}, {"subsystem": "Pentose Phosphate Pathway", "name": "Transketolase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TKT1"]}, "metabolites": {"r5p_c": -1.0, "xu5p__D_c": -1.0, "g3p_c": 1.0, "s7p_c": 1.0}, "id": "TKT1", "gene_reaction_rule": "ECD_02356"}, {"subsystem": "Pentose Phosphate Pathway", "name": "Transketolase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TKT2"]}, "metabolites": {"e4p_c": -1.0, "xu5p__D_c": -1.0, "g3p_c": 1.0, "f6p_c": 1.0}, "id": "TKT2", "gene_reaction_rule": "ECD_02356"}, {"subsystem": "Oxidative Phosphorylation", "name": "Trimethylamine N-oxide reductase (menaquinol 8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TMAOR1"]}, "metabolites": {"h2o_c": 1.0, "mqn8_c": 1.0, "h_c": -1.0, "tmao_c": -1.0, "tma_c": 1.0, "mql8_c": -1.0}, "id": "TMAOR1", "gene_reaction_rule": "ECD_01556 and ECD_01557 and ECD_01558 and ECD_01559"}, {"subsystem": "Oxidative Phosphorylation", "name": "Trimethylamine N-oxide reductase (menaquinol 8) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TMAOR1pp"]}, "metabolites": {"mqn8_c": 1.0, "h_p": -1.0, "tmao_p": -1.0, "tma_p": 1.0, "h2o_p": 1.0, "mql8_c": -1.0}, "id": "TMAOR1pp", "gene_reaction_rule": "(ECD_00999 and ECD_01000) or (ECD_01843 and ECD_01844)"}, {"subsystem": "Oxidative Phosphorylation", "name": "Trimethylamine N-oxide reductase (demethylmenaquinol 8) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TMAOR2pp"]}, "metabolites": {"2dmmq8_c": 1.0, "h_p": -1.0, "tmao_p": -1.0, "2dmmql8_c": -1.0, "h2o_p": 1.0, "tma_p": 1.0}, "id": "TMAOR2pp", "gene_reaction_rule": "(ECD_00999 and ECD_01000) or (ECD_01843 and ECD_01844)"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Trimethylamine N-oxide transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TMAOtex"]}, "metabolites": {"tmao_p": 1.0, "tmao_e": -1.0}, "id": "TMAOtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Trimethylamine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TMAtex"]}, "metabolites": {"tma_e": -1.0, "tma_p": 1.0}, "id": "TMAtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Thymidine kinase (ATP:thymidine)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TMDK1"]}, "metabolites": {"thymd_c": -1.0, "dtmp_c": 1.0, "h_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "TMDK1", "gene_reaction_rule": "ECD_01214"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Thymidine phosphorylase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TMDPP"]}, "metabolites": {"2dr1p_c": 1.0, "pi_c": -1.0, "thym_c": 1.0, "thymd_c": -1.0}, "id": "TMDPP", "gene_reaction_rule": "ECD_04258"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Thymidylate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TMDS"]}, "metabolites": {"dump_c": -1.0, "dtmp_c": 1.0, "dhf_c": 1.0, "mlthf_c": -1.0}, "id": "TMDS", "gene_reaction_rule": "ECD_02675"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Thiamine kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TMK"]}, "metabolites": {"thm_c": -1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "thmmp_c": 1.0}, "id": "TMK", "gene_reaction_rule": "ECD_01102"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Thiamine-phosphate kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TMPK"]}, "metabolites": {"thmpp_c": 1.0, "adp_c": 1.0, "atp_c": -1.0, "thmmp_c": -1.0}, "id": "TMPK", "gene_reaction_rule": "ECD_00365"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Thiamine-phosphate diphosphorylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TMPPP"]}, "metabolites": {"4mpetz_c": -1.0, "ppi_c": 1.0, "h_c": -1.0, "2mahmp_c": -1.0, "thmmp_c": 1.0}, "id": "TMPPP", "gene_reaction_rule": "ECD_03870"}, {"subsystem": "Glycolysis/Gluconeogenesis", "name": "Triose-phosphate isomerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TPI"]}, "metabolites": {"dhap_c": -1.0, "g3p_c": 1.0}, "id": "TPI", "gene_reaction_rule": "ECD_03804"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Triphosphoribosyl-dephospho-CoA synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TPRDCOAS"]}, "metabolites": {"2tpr3dpcoa_c": 1.0, "dpcoa_c": -1.0, "ade_c": 1.0, "atp_c": -1.0}, "id": "TPRDCOAS", "gene_reaction_rule": "ECD_00581"}, {"subsystem": "Oxidative Phosphorylation", "name": "Thioredoxin reductase (NADPH)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TRDR"]}, "metabolites": {"trdox_c": -1.0, "nadp_c": 1.0, "nadph_c": -1.0, "trdrd_c": 1.0, "h_c": -1.0}, "id": "TRDR", "gene_reaction_rule": "(ECD_03659 and ECD_00892) or (ECD_00892 and ECD_02476)"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Trehalose-6-phosphate hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TRE6PH"]}, "metabolites": {"tre6p_c": -1.0, "glc__D_c": 1.0, "g6p_c": 1.0, "h2o_c": -1.0}, "id": "TRE6PH", "gene_reaction_rule": "ECD_04107"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Trehalose-phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TRE6PP"]}, "metabolites": {"tre6p_c": -1.0, "tre_c": 1.0, "h2o_c": -1.0, "pi_c": 1.0}, "id": "TRE6PP", "gene_reaction_rule": "ECD_01866"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Alpha,alpha-trehalose-phosphate synthase (UDP-forming)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TRE6PS"]}, "metabolites": {"tre6p_c": 1.0, "g6p_c": -1.0, "udpg_c": -1.0, "udp_c": 1.0, "h_c": 1.0}, "id": "TRE6PS", "gene_reaction_rule": "ECD_01865"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Alpha,alpha-trehalase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TREH"]}, "metabolites": {"glc__D_c": 2.0, "tre_c": -1.0, "h2o_c": -1.0}, "id": "TREH", "gene_reaction_rule": "ECD_03367"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Alpha,alpha-trehalase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TREHpp"]}, "metabolites": {"tre_p": -1.0, "h2o_p": -1.0, "glc__D_p": 2.0}, "id": "TREHpp", "gene_reaction_rule": "ECD_01172"}, {"subsystem": "Transport, Inner Membrane", "name": "Trehalose transport via PEP:Pyr PTS (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TREptspp"]}, "metabolites": {"tre6p_c": 1.0, "pep_c": -1.0, "pyr_c": 1.0, "tre_p": -1.0}, "id": "TREptspp", "gene_reaction_rule": "ECD_02317 and ECD_02315 and ECD_02316 and ECD_04108"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Trehalose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TREtex"]}, "metabolites": {"tre_p": 1.0, "tre_e": -1.0}, "id": "TREtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Tryptophanase (L-tryptophan)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TRPAS2"]}, "metabolites": {"h2o_c": -1.0, "pyr_c": 1.0, "nh4_c": 1.0, "trp__L_c": -1.0, "indole_c": 1.0}, "id": "TRPAS2", "gene_reaction_rule": "ECD_03592"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Tryptophan synthase (indoleglycerol phosphate)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TRPS1"]}, "metabolites": {"h2o_c": 1.0, "ser__L_c": -1.0, "g3p_c": 1.0, "trp__L_c": 1.0, "3ig3p_c": -1.0}, "id": "TRPS1", "gene_reaction_rule": "ECD_01234 and ECD_01235"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Tryptophan synthase (indole)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TRPS2"]}, "metabolites": {"h2o_c": 1.0, "ser__L_c": -1.0, "indole_c": -1.0, "trp__L_c": 1.0}, "id": "TRPS2", "gene_reaction_rule": "ECD_01234 and ECD_01235"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Tryptophan synthase (indoleglycerol phosphate)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TRPS3"]}, "metabolites": {"g3p_c": 1.0, "indole_c": 1.0, "3ig3p_c": -1.0}, "id": "TRPS3", "gene_reaction_rule": "ECD_01234 and ECD_01235"}, {"subsystem": "tRNA Charging", "name": "Tryptophanyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TRPTRS"]}, "metabolites": {"atp_c": -1.0, "ppi_c": 1.0, "trnatrp_c": -1.0, "amp_c": 1.0, "trptrna_c": 1.0, "trp__L_c": -1.0}, "id": "TRPTRS", "gene_reaction_rule": "ECD_03236"}, {"subsystem": "Transport, Inner Membrane", "name": "L-tryptophan reversible transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TRPt2rpp"]}, "metabolites": {"trp__L_c": 1.0, "trp__L_p": -1.0, "h_p": -1.0, "h_c": 1.0}, "id": "TRPt2rpp", "gene_reaction_rule": "ECD_03028 or ECD_03593 or ECD_01431 or ECD_00111"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-tryptophan transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TRPtex"]}, "metabolites": {"trp__L_e": -1.0, "trp__L_p": 1.0}, "id": "TRPtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Tartronate semialdehyde reductase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TRSARr"]}, "metabolites": {"nadh_c": -1.0, "glyc__R_c": 1.0, "2h3oppan_c": -1.0, "nad_c": 1.0, "h_c": -1.0}, "id": "TRSARr", "gene_reaction_rule": "ECD_00459 or ECD_02990"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Thiosulfate transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TSULabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "tsul_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "tsul_c": 1.0}, "id": "TSULabcpp", "gene_reaction_rule": "(ECD_02322 and ECD_02325 and ECD_02324 and ECD_02323) or (ECD_02322 and ECD_02324 and ECD_02323 and ECD_03802)"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Thiosulfate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TSULtex"]}, "metabolites": {"tsul_e": -1.0, "tsul_p": 1.0}, "id": "TSULtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Outer Membrane", "name": "Tetradecanoate transport via facilitated irreversible diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TTDCAtexi"]}, "metabolites": {"ttdca_e": -1.0, "ttdca_p": 1.0}, "id": "TTDCAtexi", "gene_reaction_rule": "ECD_02268"}, {"subsystem": "Transport, Outer Membrane", "name": "Tetradecenoate transport via facilitated irreversible diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TTDCEAtexi"]}, "metabolites": {"ttdcea_e": -1.0, "ttdcea_p": 1.0}, "id": "TTDCEAtexi", "gene_reaction_rule": "ECD_02268"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Tetracycline transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TTRCYCtex"]}, "metabolites": {"ttrcyc_e": -1.0, "ttrcyc_p": 1.0}, "id": "TTRCYCtex", "gene_reaction_rule": "ECD_01348 or ECD_02142 or ECD_00933 or ECD_00238"}, {"subsystem": "Transport, Outer Membrane", "name": "Tetracycline transport via TolC system", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TTRCYCtpp"]}, "metabolites": {"ttrcyc_e": 1.0, "ttrcyc_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "TTRCYCtpp", "gene_reaction_rule": "ECD_00414 and ECD_02361 and ECD_02907"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Tungstate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TUNGStex"]}, "metabolites": {"tungs_e": -1.0, "tungs_p": 1.0}, "id": "TUNGStex", 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"name": "L-tyrosine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TYRtex"]}, "metabolites": {"tyr__L_e": -1.0, "tyr__L_p": 1.0}, "id": "TYRtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "ThDP adenylyl transferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ThDPAT"]}, "metabolites": {"thmpp_c": -1.0, "athtp_c": 1.0, "pi_c": 1.0, "h_c": -1.0, "adp_c": -1.0}, "id": "ThDPAT", "gene_reaction_rule": ""}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "UDP-3-O-(3-hydroxymyristoyl)glucosamine acyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["U23GAAT"]}, "metabolites": {"h_c": 1.0, "u23ga_c": 1.0, "ACP_c": 1.0, "3hmrsACP_c": -1.0, "u3hga_c": -1.0}, "id": "U23GAAT", "gene_reaction_rule": "ECD_00177"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UAAGDS"]}, "metabolites": {"atp_c": -1.0, "26dap__M_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "uamag_c": -1.0, "ugmd_c": 1.0}, "id": "UAAGDS", "gene_reaction_rule": "ECD_00086"}, {"subsystem": "Alternate Carbon Metabolism", "name": "UDP-N-acetyl-D-galactosamine pyrophosphohydrolase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UACGALPpp"]}, "metabolites": {"h2o_p": -1.0, "ump_p": 1.0, "acgal1p_p": 1.0, "udpacgal_p": -1.0, "h_p": 2.0}, "id": "UACGALPpp", "gene_reaction_rule": "ECD_00431"}, {"subsystem": "Alternate Carbon Metabolism", "name": "UDP-N-acetyl-D-glucosamine pyrophosphohydrolase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UACGAMPpp"]}, "metabolites": {"h2o_p": -1.0, "ump_p": 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"UDP-N-acetylmuramoyl-L-alanine synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UAMAS"]}, "metabolites": {"atp_c": -1.0, "uamr_c": -1.0, "ala__L_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "uama_c": 1.0}, "id": "UAMAS", "gene_reaction_rule": "ECD_00092"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "UDP-N-acetylenolpyruvoylglucosamine reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UAPGR"]}, "metabolites": {"uamr_c": 1.0, "uaccg_c": -1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0}, "id": "UAPGR", "gene_reaction_rule": "ECD_03853"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Undecaprenyl-diphosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UDCPDP"]}, "metabolites": {"udcpdp_c": -1.0, "h2o_c": -1.0, "pi_c": 1.0, "h_c": 1.0, "udcpp_c": 1.0}, "id": "UDCPDP", "gene_reaction_rule": "ECD_00808 or ECD_01255 or ECD_02927"}, {"subsystem": "Cofactor and 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"udpglcur_p": 1.0}, "id": "UDPGLCURtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "UDPglucose pyrophosphohydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UDPGPpp"]}, "metabolites": {"h2o_p": -1.0, "ump_p": 1.0, "g1p_p": 1.0, "h_p": 2.0, "udpg_p": -1.0}, "id": "UDPGPpp", "gene_reaction_rule": "ECD_00431"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "UDPglucose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["UDPGtex"]}, "metabolites": {"udpg_e": -1.0, "udpg_p": 1.0}, "id": "UDPGtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "UDP-4''-ketopentose:UDP-4-amino-4-deoxy-L-arabinose aminotransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": 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"gene_reaction_rule": "ECD_02390"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Peroxyureidoacrylate hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["URACPAH"]}, "metabolites": {"h2o_c": -1.0, "poaac_c": 1.0, "h_c": 1.0, "uracp_c": -1.0, "cbm_c": 1.0}, "id": "URACPAH", "gene_reaction_rule": "ECD_01014"}, {"subsystem": "Transport, Inner Membrane", "name": "Uracil transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["URAt2pp", "URAt2rpp"]}, "metabolites": {"ura_c": 1.0, "ura_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "URAt2pp_copy1", "gene_reaction_rule": "ECD_02389"}, {"subsystem": "Transport, Inner Membrane", "name": "Uracil transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["URAt2pp", "URAt2rpp"]}, "metabolites": {"ura_c": 1.0, "ura_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "URAt2pp_copy2", "gene_reaction_rule": "ECD_01009"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Uracil transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["URAtex"]}, "metabolites": {"ura_p": 1.0, "ura_e": -1.0}, "id": "URAtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Ureidoglycolate dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["URDGLYCD"]}, "metabolites": {"urdglyc_c": -1.0, "nadh_c": 1.0, "oxur_c": 1.0, "h_c": 1.0, "nad_c": -1.0}, "id": "URDGLYCD", "gene_reaction_rule": "ECD_00467"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Urea transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["UREAtex"]}, "metabolites": {"urea_p": 1.0, "urea_e": -1.0}, "id": "UREAtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Urea transport via facilitate diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["UREAtpp"]}, "metabolites": {"urea_p": -1.0, "urea_c": 1.0}, "id": "UREAtpp", "gene_reaction_rule": "ECD_03812"}, {"subsystem": "Unassigned", "name": "Uricase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["URIC"]}, "metabolites": {"o2_c": -1.0, "h2o_c": -2.0, "urate_c": -1.0, "h2o2_c": 1.0, "co2_c": 1.0, "alltn_c": 1.0}, "id": "URIC", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "Uridine hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["URIH"]}, "metabolites": {"uri_c": -1.0, "h2o_c": -1.0, "rib__D_c": 1.0, "ura_c": 1.0}, "id": "URIH", "gene_reaction_rule": "ECD_02091 or ECD_00617 or ECD_00034"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Uridine kinase (GTP:Uridine)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["URIK2"]}, "metabolites": {"uri_c": -1.0, "gtp_c": -1.0, "h_c": 1.0, "ump_c": 1.0, "gdp_c": 1.0}, "id": "URIK2", "gene_reaction_rule": "ECD_01972"}, {"subsystem": "Transport, Inner Membrane", "name": "Uridine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["URIt2pp", "URIt2rpp"]}, "metabolites": {"uri_c": 1.0, "uri_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "URIt2pp_copy1", "gene_reaction_rule": "ECD_02302 or ECD_02794"}, {"subsystem": "Transport, Outer Membrane", "name": "Uridine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["URItex"]}, "metabolites": {"uri_p": 1.0, "uri_e": -1.0}, "id": "URItex", "gene_reaction_rule": "ECD_00359"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "UDP-sugar hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["USHD"]}, "metabolites": {"u23ga_c": -1.0, "h2o_c": -1.0, "h_c": 2.0, "lipidX_c": 1.0, "ump_c": 1.0}, "id": "USHD", "gene_reaction_rule": "ECD_00474"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Valine transaminase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["VALTA"]}, "metabolites": {"akg_c": -1.0, "glu__L_c": 1.0, "val__L_c": -1.0, "3mob_c": 1.0}, "id": "VALTA", "gene_reaction_rule": "ECD_03648"}, {"subsystem": "tRNA Charging", "name": "Valyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["VALTRS"]}, "metabolites": {"valtrna_c": 1.0, "atp_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0, "trnaval_c": -1.0, "val__L_c": -1.0}, "id": "VALTRS", "gene_reaction_rule": "ECD_04124"}, {"subsystem": "Transport, Inner Membrane", "name": "L-valine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["VALabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "val__L_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "val__L_c": 1.0}, "id": "VALabcpp", "gene_reaction_rule": "ECD_03303 and ECD_03304 and ECD_03306 and ECD_03309 and ECD_03305"}, {"subsystem": "Transport, Inner Membrane", "name": "L-valine reversible transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["VALt2rpp"]}, "metabolites": {"val__L_p": -1.0, "h_c": 1.0, "h_p": -1.0, "val__L_c": 1.0}, "id": "VALt2rpp", "gene_reaction_rule": "ECD_00349 or (ECD_02538 and ECD_02537)"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-valine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["VALtex"]}, "metabolites": {"val__L_e": -1.0, "val__L_p": 1.0}, "id": "VALtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Valine-pyruvate aminotransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["VPAMTr", "VPAMT"]}, "metabolites": {"pyr_c": 1.0, "3mob_c": -1.0, "ala__L_c": -1.0, "val__L_c": 1.0}, "id": "VPAMTr_copy1", "gene_reaction_rule": "ECD_03424"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Tungsten pterin cofactor synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["WCOS"]}, "metabolites": {"cu2_c": 1.0, "h2o_c": 1.0, "tungs_c": -1.0, "h_c": -2.0, "amp_c": 1.0, "wco_c": 1.0, "mptamp_c": -1.0}, "id": "WCOS", "gene_reaction_rule": "ECD_00794"}, {"subsystem": "Alternate Carbon Metabolism", "name": "L-xylulose 5-phosphate 3-epimerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["X5PL3E"]}, "metabolites": {"xu5p__L_c": -1.0, "ru5p__L_c": 1.0}, "id": "X5PL3E", "gene_reaction_rule": "ECD_04064"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Xanthine dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XAND"]}, "metabolites": {"h2o_c": -1.0, "xan_c": -1.0, "urate_c": 1.0, "h_c": 1.0, "nad_c": -1.0, "nadh_c": 1.0}, "id": "XAND", "gene_reaction_rule": "ECD_02699 and ECD_02700 and ECD_02701"}, {"subsystem": "Transport, Inner Membrane", "name": "Xanthine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XANt2pp"]}, "metabolites": {"xan_c": 1.0, "h_c": 1.0, "h_p": -1.0, "xan_p": -1.0}, "id": "XANt2pp", "gene_reaction_rule": "ECD_03512 or ECD_02715"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Xanthine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XANtex"]}, "metabolites": {"xan_e": -1.0, "xan_p": 1.0}, "id": "XANtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "Xanthine reversible transport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XANtpp"]}, "metabolites": {"xan_p": -1.0, "xan_c": 1.0}, "id": "XANtpp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "XMP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XMPtex"]}, "metabolites": {"xmp_p": 1.0, "xmp_e": -1.0}, "id": "XMPtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Xanthine phosphoribosyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XPPT"]}, "metabolites": {"xmp_c": 1.0, "ppi_c": 1.0, "prpp_c": -1.0, "xan_c": -1.0}, "id": "XPPT", "gene_reaction_rule": "ECD_00233"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Xanthosine hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XTSNH"]}, "metabolites": {"h2o_c": -1.0, "rib__D_c": 1.0, "xan_c": 1.0, "xtsn_c": -1.0}, "id": "XTSNH", "gene_reaction_rule": "ECD_00034"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Xanthosine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XTSNtex"]}, "metabolites": {"xtsn_e": -1.0, "xtsn_p": 1.0}, "id": "XTSNtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Xylose isomerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XYLI1"]}, "metabolites": {"xylu__D_c": 1.0, "xyl__D_c": -1.0}, "id": "XYLI1", "gene_reaction_rule": "ECD_03417"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Xylose isomerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XYLI2"]}, "metabolites": {"glc__D_c": -1.0, "fru_c": 1.0}, "id": "XYLI2", "gene_reaction_rule": "ECD_03417"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Xylulokinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XYLK"]}, "metabolites": {"xylu__D_c": -1.0, "xu5p__D_c": 1.0, "h_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "XYLK", "gene_reaction_rule": "ECD_00065 or ECD_03416"}, {"subsystem": "Alternate Carbon Metabolism", "name": "L-xylulokinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XYLK2"]}, "metabolites": {"xylu__L_c": -1.0, "xu5p__L_c": 1.0, "h_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "XYLK2", "gene_reaction_rule": "ECD_00065 or ECD_03432"}, {"subsystem": "Transport, Inner Membrane", "name": "L-xylulose transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XYLUt2pp"]}, "metabolites": {"xylu__L_c": 1.0, "xylu__L_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "XYLUt2pp", "gene_reaction_rule": "ECD_03429 and ECD_03430 and ECD_03431"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-xylulose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XYLUtex"]}, "metabolites": {"xylu__L_p": 1.0, "xylu__L_e": -1.0}, "id": "XYLUtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport, Inner Membrane", "name": "D-xylose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XYLabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "xyl__D_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "xyl__D_c": 1.0}, "id": "XYLabcpp", "gene_reaction_rule": "ECD_03418 and vsr and ECD_03420"}, {"subsystem": "Transport, Inner Membrane", "name": "D-xylose transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XYLt2pp"]}, "metabolites": {"xyl__D_p": -1.0, "h_c": 1.0, "h_p": -1.0, "xyl__D_c": 1.0}, "id": "XYLt2pp", "gene_reaction_rule": "ECD_03903"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-xylose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XYLtex"]}, "metabolites": {"xyl__D_e": -1.0, "xyl__D_p": 1.0}, "id": "XYLtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Zinc (Zn+2) ABC transporter, efflux (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ZN2abcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "zn2_p": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "zn2_c": -1.0}, "id": "ZN2abcpp", "gene_reaction_rule": "ECD_03318"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Zinc (Zn+2) transport out via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ZN2t3pp"]}, "metabolites": {"zn2_p": 1.0, "h_c": 1.0, "h_p": -1.0, "zn2_c": -1.0}, "id": "ZN2t3pp", "gene_reaction_rule": "ECD_03800 or ECD_00705"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Zinc transport in via permease (no H+)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ZN2tpp"]}, "metabolites": {"zn2_c": 1.0, "zn2_p": -1.0}, "id": "ZN2tpp", "gene_reaction_rule": "ECD_02912"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Zinc (Zn+2) transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ZNabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "zn2_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "zn2_c": 1.0}, "id": "ZNabcpp", "gene_reaction_rule": "ECD_01828 and 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hydroxyphenylacetate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_4hphac_LPAREN_e_RPAREN_", "EX_4hpa_LPAREN_e_RPAREN_"]}, "metabolites": {"4hphac_e": -1.0}, "id": "EX_4hphac_e_copy1", "gene_reaction_rule": ""}, {"subsystem": "4 hydroxyphenylacetate catabolism", "name": "4 carboxy 2 hydroxymuconate 6 semialdehyde dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CMCMSAD"]}, "metabolites": {"h2o_c": -1.0, "5cmhmsa_c": -1.0, "h_c": 2.0, "nad_c": -1.0, "nadh_c": 1.0, "5cmhm_c": 1.0}, "id": "CMCMSAD", "gene_reaction_rule": "ECD_04229"}, {"subsystem": "Transport Inner Membrane", "name": "Tartrate facilitated transport periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TARTRtpp"]}, "metabolites": {"tartr__L_p": -1.0, "tartr__L_c": 1.0}, "id": "TARTRtpp", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "4 Aminobenzoate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_4abz_LPAREN_e_RPAREN_"]}, "metabolites": {"4abz_e": -1.0}, "id": "EX_4abz_e", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon metabolism", "name": "2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHEDAA"]}, "metabolites": {"pyr_c": 1.0, "sucsal_c": 1.0, "24dhhed_c": -1.0}, "id": "DHEDAA", "gene_reaction_rule": "ECD_04225 and ECD_02171"}, {"subsystem": "Membrane Lipid Metabolism", "name": "3-hydroxyacyl-CoA dehydrogenase (3-oxooctanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HACD3i"]}, "metabolites": {"nad_c": -1.0, "nadh_c": 1.0, "h_c": 1.0, "3oocoa_c": 1.0, "3hocoa_c": -1.0}, "id": "HACD3i", "gene_reaction_rule": "ECD_02265 or ECD_03737"}, {"subsystem": "Transport Inner Membrane", "name": "4 hydroxyphenylacetate transport in via proton symport periplasm ", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["4HOXPACt2pp"]}, "metabolites": {"4hphac_p": -1.0, "4hphac_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "4HOXPACt2pp", "gene_reaction_rule": "ECD_04224"}, {"subsystem": "Transport Outer Membrane Porin", "name": "3 Phospho D glycerate transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["3PGtex"]}, "metabolites": {"3pg_e": -1.0, "3pg_p": 1.0}, "id": "3PGtex", "gene_reaction_rule": "ECD_00238 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport", "name": "Octadecenoate transport via proton symport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["OCDCEAt2pp"]}, "metabolites": {"ocdcea_c": 1.0, "ocdcea_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "OCDCEAt2pp", "gene_reaction_rule": "ECD_02272"}, {"subsystem": "Exchange", "name": "Cisaconitate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_acon_C_LPAREN_e_RPAREN_"]}, "metabolites": {"acon_C_e": -1.0}, "id": "EX_acon_C_e", "gene_reaction_rule": ""}, {"subsystem": "Transport", "name": "Glycine betaine transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYBt2pp", "GLYBt6pp"]}, "metabolites": {"glyb_c": 1.0, "h_c": 1.0, "h_p": -1.0, "glyb_p": -1.0}, "id": "GLYBt2pp_copy2", "gene_reaction_rule": "ECD_03982"}, {"subsystem": "4 hydroxyphenylacetate catabolism", "name": "3 4 dihydroxyphenylacetate 2 3 dioxygenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHPDO"]}, "metabolites": {"34dhpha_c": -1.0, "5cmhmsa_c": 1.0, "h_c": 1.0, "o2_c": -1.0}, "id": "DHPDO", "gene_reaction_rule": "ECD_04228"}, {"subsystem": "4 hydroxyphenylacetate catabolism", "name": "5 carboxy 2 oxohept 3 enedioate decarboxylation", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["OPTCCL"]}, "metabolites": {"co2_c": 1.0, "h_c": -1.0, "5cohe_c": -1.0, "2hh24dd_c": 1.0}, "id": "OPTCCL", "gene_reaction_rule": "ECD_04230"}, {"subsystem": "Arginine and Proline Metabolism", "name": "2-keto-4-methylthiobutyrate transamination", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UNK3"]}, "metabolites": {"akg_c": 1.0, "glu__L_c": -1.0, "2kmb_c": -1.0, "met__L_c": 1.0}, "id": "UNK3", "gene_reaction_rule": "ECD_03926"}, {"subsystem": "Transport", "name": "Hexadecanoate transport via proton symport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HDCAt2pp"]}, "metabolites": {"hdca_c": 1.0, "h_c": 1.0, "h_p": -1.0, "hdca_p": -1.0}, "id": "HDCAt2pp", "gene_reaction_rule": "ECD_02268"}, {"subsystem": "Exchange", "name": "Chitobiose exchange", "upper_bound": 0.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_chitob_LPAREN_e_RPAREN_"]}, "metabolites": {"chitob_e": -1.0}, "id": "EX_chitob_e", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "D Tagatose 1 phosphate kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TAG1PK"]}, "metabolites": {"h_c": 1.0, "tag1p__D_c": -1.0, "tagdp__D_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "TAG1PK", "gene_reaction_rule": "ECD_01692"}, {"subsystem": "Membrane Lipid Metabolism", "name": "3-hydroxyacyl-CoA dehydrogenase (3-oxohexanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HACD2i"]}, "metabolites": {"3hhcoa_c": -1.0, "nadh_c": 1.0, "h_c": 1.0, "nad_c": -1.0, "3ohcoa_c": 1.0}, "id": "HACD2i", "gene_reaction_rule": "ECD_03737 or ECD_02265"}, {"subsystem": "Exchange", "name": "Ferrioxamine B exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_feroxB_LPAREN_e_RPAREN_"]}, "metabolites": {"feroxB_e": -1.0}, "id": "EX_feroxB_e", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "Tricarballylate Exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_tcb_LPAREN_e_RPAREN_"]}, "metabolites": {"tcb_e": -1.0}, "id": "EX_tcb_e", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "Trithionate Exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_tton_LPAREN_e_RPAREN_"]}, "metabolites": {"tton_e": -1.0}, "id": "EX_tton_e", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "4-Hydroxy-L-threonine Exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_4hthr_LPAREN_e_RPAREN_"]}, "metabolites": {"4hthr_e": -1.0}, "id": "EX_4hthr_e", "gene_reaction_rule": ""}, {"subsystem": "4 hydroxyphenylacetate catabolism", "name": "4 hydroxyphenylacetate 3 monooxygenase nadh", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HPA3MO"]}, "metabolites": {"o2_c": -1.0, "h2o_c": 1.0, "34dhpha_c": 1.0, "h_c": -1.0, "nad_c": 1.0, "4hphac_c": -1.0, "nadh_c": -1.0}, "id": "HPA3MO", "gene_reaction_rule": "ECD_04221 or ECD_04222"}, {"subsystem": "Transport", "name": "1-deoxy-d-xyluose transport", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DXYLUDtex"]}, "metabolites": {"dxyl_e": -1.0, "dxyl_p": 1.0}, "id": "DXYLUDtex", "gene_reaction_rule": "ECD_00238 or ECD_01348 or ECD_02142"}, {"subsystem": "Transport", "name": "Chitobiose transport via PTS", "upper_bound": 0.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CHITOBpts"]}, "metabolites": {"pep_c": -1.0, "pyr_c": 1.0, "chitob_p": -1.0, "chit6p_c": 1.0}, "id": "CHITOBpts", "gene_reaction_rule": "ECD_01705 and ECD_01707 and ECD_01706 and ECD_02315 and ECD_02316"}, {"subsystem": "Exchange", "name": "Ferrioxamine E fe exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_feroxEfe_LPAREN_e_RPAREN_"]}, "metabolites": {"feroxEfe_e": -1.0}, "id": "EX_feroxEfe_e", "gene_reaction_rule": ""}, {"subsystem": "Transport Inner Membrane", "name": "Aminoimidazole riboside facilitated transport periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AIRStpp"]}, "metabolites": {"airs_p": -1.0, "airs_c": 1.0}, "id": "AIRStpp", "gene_reaction_rule": ""}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Pyridoxine 5-phosphate phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PDXPP"]}, "metabolites": {"pydxn_c": 1.0, "h2o_c": -1.0, "pi_c": 1.0, "pdx5p_c": -1.0}, "id": "PDXPP", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "Ferrioxamine E exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_feroxE_LPAREN_e_RPAREN_"]}, "metabolites": {"feroxE_e": -1.0}, "id": "EX_feroxE_e", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "O-acetyl-L-serine sulfhydrylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SLCYSS"]}, "metabolites": {"ac_c": 1.0, "acser_c": -1.0, "tsul_c": -1.0, "slcys_c": 1.0}, "id": "SLCYSS", "gene_reaction_rule": "ECD_02321"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "4-Hydroxy-L-threonine kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["4HTHRK"]}, "metabolites": {"phthr_c": 1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "4hthr_c": -1.0}, "id": "4HTHRK", "gene_reaction_rule": "ECD_00003"}, {"subsystem": "Membrane Lipid Metabolism", "name": "3-hydroxyacyl-CoA dehydrogenase (3-oxododecanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HACD5i"]}, "metabolites": {"3oddcoa_c": 1.0, "nadh_c": 1.0, "3hddcoa_c": -1.0, "nad_c": -1.0, "h_c": 1.0}, "id": "HACD5i", "gene_reaction_rule": "ECD_03737 or ECD_02265"}, {"subsystem": "4 hydroxyphenylacetate catabolism", "name": "4 hydroxyphenylacetate 3 monooxygenase FADH2", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["4HOXPACMOF"]}, "metabolites": {"o2_c": -1.0, "h2o_c": 1.0, "34dhpha_c": 1.0, "fadh2_c": -1.0, "4hphac_c": -1.0, "fad_c": 1.0}, "id": "4HOXPACMOF", "gene_reaction_rule": "ECD_04222"}, {"subsystem": "Exchange", "name": "2-3-dihydroxybenzoylserine trimer Exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_23dhbzs3_LPAREN_e_RPAREN_"]}, "metabolites": {"23dhbzs3_e": -1.0}, "id": "EX_23dhbzs3_e", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "Tetrathionate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_tet_LPAREN_e_RPAREN_"]}, "metabolites": {"tet_e": -1.0}, "id": "EX_tet_e", "gene_reaction_rule": ""}, {"subsystem": "Transport Outer Membrane", "name": "Salmochelin S4 Fe III transport via ton system extracellular ", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SALCHS4FEtonex"]}, "metabolites": {"salchs4fe_e": -1.0, "salchs4fe_p": 1.0, "h_p": -1.0, "h_c": 1.0}, "id": "SALCHS4FEtonex", "gene_reaction_rule": "(ECD_00550 or ECD_02084) and (ECD_01226 and ECD_02879 and ECD_02880)"}, {"subsystem": "Extracellular exchange", "name": "Salmochelin S4 exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_SALCHS4_LPAREN_e_RPAREN_"]}, "metabolites": {"salchs4_e": -1.0}, "id": "EX_salchs4_e", "gene_reaction_rule": ""}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Salmochelin S4 Fe III transport via ABC system periplasm ", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SALCHS4FEabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "salchs4fe_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "salchs4fe_p": -1.0}, "id": "SALCHS4FEabcpp", "gene_reaction_rule": "ECD_00559 and ECD_00555 and ECD_00557 and ECD_00556"}, {"subsystem": "Transport", "name": "Nicotinamide riboside transport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["RNAMtpp"]}, "metabolites": {"rnam_p": -1.0, "rnam_c": 1.0}, "id": "RNAMtpp", "gene_reaction_rule": "ECD_00704"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Chitobiose-6-phosphate hydrolase", "upper_bound": 0.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CHITPH"]}, "metabolites": {"acgam_c": 1.0, "h2o_c": -1.0, "acgam6p_c": 1.0, "chit6p_c": -1.0}, "id": "CHITPH", "gene_reaction_rule": "ECD_01703"}, {"subsystem": "Transport Inner Membrane", "name": "L cystine uptake via ABC system periplasm ", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSIabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "cysi__L_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "cysi__L_p": -1.0, "pi_c": 1.0}, "id": "CYSIabcpp", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "Oxaloacetate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_oaa_LPAREN_e_RPAREN_"]}, "metabolites": {"oaa_e": -1.0}, "id": "EX_oaa_e", "gene_reaction_rule": ""}, {"subsystem": "Transport", "name": "Octadecanoate transport via proton symport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["OCDCAt2pp"]}, "metabolites": {"ocdca_p": -1.0, "h_c": 1.0, "h_p": -1.0, "ocdca_c": 1.0}, "id": "OCDCAt2pp", "gene_reaction_rule": "ECD_02272"}, {"subsystem": "Exchange", "name": "Salmochelin-S2-Fe-III Exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_salchs2fe_LPAREN_e_RPAREN_"]}, "metabolites": {"salchs2fe_e": -1.0}, "id": "EX_salchs2fe_e", "gene_reaction_rule": ""}, {"subsystem": "Transport", "name": "L-gulonate transport", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GULNLtex"]}, "metabolites": {"guln__L_e": -1.0, "guln__L_p": 1.0}, "id": "GULNLtex", "gene_reaction_rule": "ECD_00238 or ECD_01348 or ECD_02142"}, {"subsystem": "Histidine metabolism", "name": "Urocanate hydratase", "upper_bound": 0.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UROCANH"]}, "metabolites": {"4iz5pp_c": 1.0, "h2o_c": -1.0, "urocan_c": -1.0}, "id": "UROCANH", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "2hh24dd hydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2HH24DDH1", "HPAH"]}, "metabolites": {"24dhhed_c": 1.0, "h2o_c": -1.0, "2hh24dd_c": -1.0}, "id": "2HH24DDH1_copy1", "gene_reaction_rule": "ECD_04226"}, {"subsystem": "Membrane Lipid Metabolism", "name": "3-hydroxyacyl-CoA dehydrogenase (3-oxodecanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HACD4i"]}, "metabolites": {"3odcoa_c": 1.0, "3hdcoa_c": -1.0, "h_c": 1.0, "nad_c": -1.0, "nadh_c": 1.0}, "id": "HACD4i", "gene_reaction_rule": "ECD_03737 or ECD_02265"}, {"subsystem": "Exchange", "name": "L Cystine exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_cysi_L_LPAREN_e_RPAREN_"]}, "metabolites": {"cysi__L_e": -1.0}, "id": "EX_cysi__L_e", "gene_reaction_rule": ""}, {"subsystem": "Inorganic Ion 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proton symport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TTDCAt2pp"]}, "metabolites": {"ttdca_p": -1.0, "h_c": 1.0, "h_p": -1.0, "ttdca_c": 1.0}, "id": "TTDCAt2pp", "gene_reaction_rule": "ECD_02273"}, {"subsystem": "Exchange", "name": "2-3-dihydroxybenzoylserine trimer-Fe-III Exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_fe3dhbzs3_LPAREN_e_RPAREN_"]}, "metabolites": {"fe3dhbzs3_e": -1.0}, "id": "EX_fe3dhbzs3_e", "gene_reaction_rule": ""}, {"subsystem": "4 hydroxyphenylacetate catabolism", "name": "4h2kpi Lyase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["4H2KPILY"]}, "metabolites": {"pyr_c": 1.0, "sucsal_c": 1.0, "4h2kpi_c": -1.0}, "id": "4H2KPILY", "gene_reaction_rule": "ECD_04225"}, {"subsystem": "Transport", "name": "Dodecanoate transport via proton symport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DDCAt2pp"]}, "metabolites": {"ddca_c": 1.0, "ddca_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "DDCAt2pp", "gene_reaction_rule": "ECD_02273"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Salmochelin s2 Fe III sequestration", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SALCHS2FEexs"]}, "metabolites": {"salchs2fe_e": 1.0, "salchs2_e": -1.0, "fe3_e": -1.0}, "id": "SALCHS2FEexs", "gene_reaction_rule": "s0001"}, {"subsystem": "Exchange", "name": "Deoxy D Ribose exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_drib_LPAREN_e_RPAREN_"]}, "metabolites": {"drib_e": -1.0}, "id": "EX_drib_e", "gene_reaction_rule": ""}, {"subsystem": "Transport, Inner Membrane", "name": "4-hydroxy-L-threonine transport", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["4HTHRtrpp"]}, "metabolites": {"4hthr_p": -1.0, "h_c": 1.0, "h_p": -1.0, "4hthr_c": 1.0}, "id": "4HTHRtrpp", "gene_reaction_rule": "ECD_02983"}, {"subsystem": "Transport", "name": "Myo-inositol transport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["INOSTtpp"]}, "metabolites": {"inost_c": 1.0, "h_c": 1.0, "h_p": -1.0, "inost_p": -1.0}, "id": "INOSTtpp", "gene_reaction_rule": ""}, {"subsystem": "Transport Outer Membrane Porin", "name": "L cystine transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYSItex"]}, "metabolites": {"cysi__L_p": 1.0, "cysi__L_e": -1.0}, "id": "CYSItex", "gene_reaction_rule": "ECD_00238 or ECD_01348 or ECD_02142"}, {"subsystem": "4 hydroxyphenylacetate catabolism", "name": "2hh24dd hydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2HH24DDH"]}, "metabolites": {"h2o_c": -1.0, "4h2kpi_c": 1.0, "2hh24dd_c": -1.0}, "id": "2HH24DDH", "gene_reaction_rule": "ECD_04226"}, {"subsystem": "Extracellular exchange", "name": "Salmochelin S4 Fe III exchange", "upper_bound": 1000.0, 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ECD_00555 and ECD_00557 and ECD_00556"}, {"subsystem": "Membrane Lipid Metabolism", "name": "3-cis-2-trans-enoyl-CoA isomerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CTECOAI6", "TDECOAI"]}, "metabolites": {"tdecoa_c": -1.0, "td2coa_c": 1.0}, "id": "CTECOAI6_copy2", "gene_reaction_rule": "ECD_03737"}, {"subsystem": "Transport Inner Membrane", "name": "Oxaloacetate transport via proton symport 2 H  periplasm ", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["OAAt2_2pp"]}, "metabolites": {"oaa_c": 1.0, "oaa_p": -1.0, "h_p": -2.0, "h_c": 2.0}, "id": "OAAt2_2pp", "gene_reaction_rule": "ECD_03376"}, {"subsystem": "Transport Outer Membrane Porin", "name": "D Tagatose transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TAGtex"]}, "metabolites": {"tag__D_p": 1.0, "tag__D_e": -1.0}, "id": "TAGtex", "gene_reaction_rule": "ECD_00238 or ECD_01348 or 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Glycerate 2 phosphate transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["2PGtex"]}, "metabolites": {"2pg_e": -1.0, "2pg_p": 1.0}, "id": "2PGtex", "gene_reaction_rule": "ECD_00238 or ECD_01348 or ECD_02142"}, {"subsystem": "Exchange", "name": "Ferrioxamine G exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_feroxG_LPAREN_e_RPAREN_"]}, "metabolites": {"feroxG_e": -1.0}, "id": "EX_feroxG_e", "gene_reaction_rule": ""}, {"subsystem": "Transport Outer Membrane Porin", "name": "Formamide transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["FOAMtex"]}, "metabolites": {"foam_p": 1.0, "foam_e": -1.0}, "id": "FOAMtex", "gene_reaction_rule": "ECD_00238 or ECD_01348 or ECD_02142"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Thiazole phosphate synthesis", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THZPSN"]}, "metabolites": {"cys__L_c": -1.0, "h2o_c": 1.0, "atp_c": -1.0, "4mpetz_c": 1.0, "ppi_c": 1.0, "ala__L_c": 1.0, "4hba_c": 1.0, "dxyl5p_c": -1.0, "h_c": 1.0, "tyr__L_c": -1.0, "co2_c": 1.0, "amp_c": 1.0}, "id": "THZPSN", "gene_reaction_rule": "ECD_02422 and ECD_03869 and (ECD_03866 and ECD_03867) and ECD_00371 and ECD_03868"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "2C-methyl-D-erythritol 2,4 cyclodiphosphate dehydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MECDPDH2"]}, "metabolites": {"2mecdp_c": -1.0, "h2o_c": 1.0, "nadh_c": -1.0, "h2mb4p_c": 1.0, "nad_c": 1.0}, "id": "MECDPDH2", "gene_reaction_rule": "ECD_02407"}, {"subsystem": "Exchange", "name": "Agmatine/putrescine antiporter (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AGMPTRCtpp"]}, "metabolites": {"agm_p": -1.0, "agm_c": 1.0, "ptrc_p": 1.0, "ptrc_c": -1.0}, "id": "AGMPTRCtpp", "gene_reaction_rule": "ECD_00537"}, {"subsystem": "Tyrosine metabolism", "name": "2-oxo-hept-3-ene-1,7-dioate hydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["OHEDH"]}, "metabolites": {"2ohed_c": -1.0, "24dhhed_c": 1.0, "h2o_c": -1.0}, "id": "OHEDH", "gene_reaction_rule": "ECD_04226"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Phosphoribosylaminoimidazolesuccinocarboxamide synthase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["PRASCSi", "PRASCS"]}, "metabolites": {"atp_c": -1.0, "5aizc_c": -1.0, "asp__L_c": -1.0, "25aics_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "PRASCSi_copy2", "gene_reaction_rule": "ECD_02368"}, {"subsystem": "Glutamate Metabolism", "name": "Glutamate synthase (NADPH)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLUSy"]}, "metabolites": {"akg_c": -1.0, "nadp_c": 1.0, "nadph_c": -1.0, "glu__L_c": 2.0, "h_c": -1.0, "gln__L_c": -1.0}, "id": "GLUSy", "gene_reaction_rule": "ECD_03077 and ECD_03078"}, {"subsystem": "Exchange", "name": "Diacetyl exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_diact_LPAREN_e_RPAREN_"]}, "metabolites": {"diact_e": -1.0}, "id": "EX_diact_e", "gene_reaction_rule": ""}, {"subsystem": "Tryptophan metabolism", "name": "Tryptophan transaminase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TRPTA"]}, "metabolites": {"akg_c": -1.0, "glu__L_c": 1.0, "indpyr_c": 1.0, "trp__L_c": -1.0}, "id": "TRPTA", "gene_reaction_rule": "ECD_03926"}, {"subsystem": "Lysine Metabolism", "name": "Piperideine dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PPRDNDH"]}, "metabolites": {"pprdn_c": -1.0, "h2o_c": -2.0, "5aptn_c": 1.0, "h_c": 1.0, "nad_c": -1.0, "nadh_c": 1.0}, "id": "PPRDNDH", "gene_reaction_rule": "ECD_02990"}, {"subsystem": "Exchange", "name": "Cellobiose exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_cellb_LPAREN_e_RPAREN_"]}, "metabolites": {"cellb_e": -1.0}, "id": "EX_cellb_e", "gene_reaction_rule": ""}, {"subsystem": "Transport", "name": "Inositol transport in via proton symport", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["INSTt2r"]}, "metabolites": {"inost_e": -1.0, "h_e": -1.0, "inost_c": 1.0, "h_c": 1.0}, "id": "INSTt2", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": " R R  2 3 Butanediol exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_btd_RR_LPAREN_e_RPAREN_"]}, "metabolites": {"btd_RR_e": -1.0}, "id": "EX_btd_RR_e", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "1,3-Propanediol exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_13ppd_LPAREN_e_RPAREN_"]}, "metabolites": {"13ppd_e": -1.0}, "id": "EX_13ppd_e", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "Ribitol exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_rbt_LPAREN_e_RPAREN_"]}, "metabolites": {"rbt_e": -1.0}, "id": "EX_rbt_e", "gene_reaction_rule": ""}, {"subsystem": "Lysine Metabolism", "name": "Glutarate-semialdehyde:NAD+ oxidoreductase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["OXPTNDH"]}, "metabolites": {"h2o_c": -1.0, "oxptn_c": -1.0, "h_c": 2.0, "nad_c": -1.0, "glutar_c": 1.0, "nadh_c": 1.0}, "id": "OXPTNDH", "gene_reaction_rule": "ECD_02517"}, {"subsystem": "Exchange", "name": "Benzoate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_bz_LPAREN_e_RPAREN_"]}, "metabolites": {"bz_e": -1.0}, "id": "EX_bz_e", "gene_reaction_rule": ""}, {"subsystem": "Benzoate degradation", "name": "3-oxoadipyl-CoA thiolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["3OXCOAT"]}, "metabolites": {"coa_c": -1.0, "succoa_c": 1.0, "oxadpcoa_c": -1.0, "accoa_c": 1.0}, "id": "3OXCOAT", "gene_reaction_rule": "ECD_02692"}, {"subsystem": "Lysine Metabolism", "name": "Glutaryl-CoA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLCOAS"]}, "metabolites": {"atp_c": -1.0, "glutcoa_c": 1.0, "coa_c": -1.0, "adp_c": 1.0, "glutar_c": -1.0, "pi_c": 1.0}, "id": "GLCOAS", "gene_reaction_rule": "ECD_00688"}, {"subsystem": "Exchange", "name": "D-Arabitol exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_abt_D_LPAREN_e_RPAREN_"]}, "metabolites": {"abt__D_e": -1.0}, "id": "EX_abt__D_e", "gene_reaction_rule": ""}, {"subsystem": "Transport; Inner Membrane", "name": "S-methylmethionine permease (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MMETt2pp"]}, "metabolites": {"h_p": -1.0, "h_c": 1.0, "mmet_p": -1.0, "mmet_c": 1.0}, "id": "MMETt2pp", "gene_reaction_rule": ""}, {"subsystem": "purine metabolism", "name": "Deoxyadenylate kinase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DADK", "DAMPK"]}, "metabolites": {"dadp_c": 1.0, "damp_c": -1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "DADK_copy2", "gene_reaction_rule": "ECD_00425"}, {"subsystem": "Exchange", "name": "Diguanylate cyclase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DGUNC"]}, "metabolites": {"gtp_c": -2.0, "ppi_c": 2.0, "cdigmp_c": 1.0}, "id": "DGUNC", "gene_reaction_rule": "ECD_01472"}, {"subsystem": "Transport; Inner Membrane", "name": "Xanthosine transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XTSNt2rpp"]}, "metabolites": {"xtsn_p": -1.0, "h_c": 1.0, "h_p": -1.0, "xtsn_c": 1.0}, "id": "XTSNt2rpp", "gene_reaction_rule": ""}, {"subsystem": "Transport; Inner Membrane", "name": "Uridine transport in via proton symport (periplasm)", "upper_bound": 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{"original_bigg_ids": ["EX_fe_LPAREN_e_RPAREN_"]}, "metabolites": {"fe_e": -1.0}, "id": "EX_fe_e", "gene_reaction_rule": ""}, {"subsystem": "Extracellular exchange", "name": "KO-KDO-LipidA Exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_KOKDOLIPA_LPAREN_e_RPAREN_"]}, "metabolites": {"kokdolipidA_e": -1.0}, "id": "EX_kokdolipidA_e", "gene_reaction_rule": ""}, {"subsystem": "S_Alternate_Carbon_source", "name": "N Acetyl D Galactosamine 6 phosphate isomerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GALAM6PISO"]}, "metabolites": {"h2o_c": -1.0, "galam6p_c": -1.0, "tag6p__D_c": 1.0, "nh4_c": 1.0}, "id": "GALAM6PISO", "gene_reaction_rule": "ECD_03008"}, {"subsystem": "S_Aromatic_Acid_Breakdown", "name": "OPET decarboxylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["OPETDC"]}, "metabolites": {"5cohe_c": -1.0, "co2_c": 1.0, "2hh24dd_c": 1.0}, "id": "OPETDC", "gene_reaction_rule": 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"EX_3hoxpac_e", "gene_reaction_rule": ""}, {"subsystem": "S_penicillin_breakdown", "name": "Penicillin transport via outer membrane porin", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["PENGt1"]}, "metabolites": {"peng_e": -1.0, "peng_p": 1.0}, "id": "PENGt1", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "S_Transport_Outer_Membrane_Porin", "name": "Raffinose transport transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["RAFFtex"]}, "metabolites": {"raffin_p": 1.0, "raffin_e": -1.0}, "id": "RAFFtex", "gene_reaction_rule": "ECD_00238 or ECD_00933 or ECD_01348 or ECD_02142"}, {"subsystem": "S_Aromatic_Acid_Breakdown", "name": "Aldehyde dehydrogenase  4 hydroxyphenylacetaldehyde  NAD ", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["4HALDD"]}, "metabolites": {"h2o_c": -1.0, "h_c": 2.0, "nad_c": -1.0, 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"3-(3-hydroxy-phenyl)propionate", "notes": {"original_bigg_ids": ["3hpppn_e"]}, "charge": -1, "formula": "C9H9O3", "compartment": "e", "id": "3hpppn_e"}, {"name": "3'-UMP", "notes": {"original_bigg_ids": ["3ump_e"]}, "charge": -2, "formula": "C9H11N2O9P", "compartment": "e", "id": "3ump_e"}, {"name": "4-Aminobutanoate", "notes": {"original_bigg_ids": ["4abut_e"]}, "charge": 0, "formula": "C4H9NO2", "compartment": "e", "id": "4abut_e"}, {"name": "4-Hydroxyphenylacetaldehyde", "notes": {"original_bigg_ids": ["4hoxpacd_e"]}, "charge": 0, "formula": "C8H8O2", "compartment": "e", "id": "4hoxpacd_e"}, {"name": "5-Dehydro-D-gluconate", "notes": {"original_bigg_ids": ["5dglcn_e"]}, "charge": -1, "formula": "C6H9O7", "compartment": "e", "id": "5dglcn_e"}, {"name": "5-Methylthio-D-ribose", "notes": {"original_bigg_ids": ["5mtr_e"]}, "charge": 0, "formula": "C6H12O4S", "compartment": "e", "id": "5mtr_e"}, {"name": "L-alanine-D-glutamate", "notes": {"original_bigg_ids": ["LalaDglu_e"]}, "charge": -1, "formula": "C8H13N2O5", "compartment": "e", "id": "LalaDglu_e"}, {"name": "L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate", "notes": {"original_bigg_ids": ["LalaDgluMdap_e"]}, "charge": -1, "formula": "C15H25N4O8", "compartment": "e", "id": "LalaDgluMdap_e"}, {"name": "L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine", "notes": {"original_bigg_ids": ["LalaDgluMdapDala_e"]}, "charge": -1, "formula": "C18H30N5O9", "compartment": "e", "id": "LalaDgluMdapDala_e"}, {"name": "L-alanine-L-glutamate", "notes": {"original_bigg_ids": ["LalaLglu_e"]}, "charge": -1, "formula": "C8H13N2O5", "compartment": "e", "id": "LalaLglu_e"}, {"name": "Acetate", "notes": {"original_bigg_ids": ["ac_e"]}, "charge": -1, "formula": "C2H3O2", "compartment": "e", "id": "ac_e"}, {"name": "Acetoacetate", "notes": {"original_bigg_ids": ["acac_e"]}, "charge": -1, "formula": "C4H5O3", "compartment": "e", "id": "acac_e"}, {"name": "Acetaldehyde", "notes": {"original_bigg_ids": ["acald_e"]}, "charge": 0, "formula": "C2H4O", "compartment": "e", "id": "acald_e"}, {"name": "N-Acetyl-D-galactosamine", "notes": {"original_bigg_ids": ["acgal_e"]}, "charge": 0, "formula": "C8H15NO6", "compartment": "e", "id": "acgal_e"}, {"name": "N-Acetyl-D-galactosamine 1-phosphate", "notes": {"original_bigg_ids": ["acgal1p_e"]}, "charge": -2, "formula": "C8H14NO9P", "compartment": "e", "id": "acgal1p_e"}, {"name": "N-Acetyl-D-glucosamine", "notes": {"original_bigg_ids": ["acgam_e"]}, "charge": 0, "formula": "C8H15NO6", "compartment": "e", "id": "acgam_e"}, {"name": "N-Acetyl-D-glucosamine 1-phosphate", "notes": {"original_bigg_ids": ["acgam1p_e"]}, "charge": -2, "formula": "C8H14NO9P", "compartment": "e", "id": "acgam1p_e"}, {"name": "N-Acetyl-D-mannosamine", "notes": {"original_bigg_ids": ["acmana_e"]}, "charge": 0, "formula": "C8H15NO6", "compartment": "e", "id": "acmana_e"}, {"name": "N-Acetylmuramate", "notes": {"original_bigg_ids": ["acmum_e"]}, "charge": -1, "formula": "C11H18NO8", "compartment": "e", "id": "acmum_e"}, {"name": "N-Acetylneuraminate", "notes": {"original_bigg_ids": ["acnam_e"]}, "charge": -1, "formula": "C11H18NO9", "compartment": "e", "id": "acnam_e"}, {"name": "4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A", "notes": {"original_bigg_ids": ["acolipa_e"]}, "charge": -9, "formula": "C181H314N3O103P4", "compartment": "e", "id": "acolipa_e"}, {"name": "O-Acetyl-L-serine", "notes": {"original_bigg_ids": ["acser_e"]}, "charge": 0, "formula": "C5H9NO4", "compartment": "e", "id": "acser_e"}, {"name": "Adenine", "notes": {"original_bigg_ids": ["ade_e"]}, "charge": 0, "formula": "C5H5N5", "compartment": "e", "id": "ade_e"}, {"name": "Adenosine", "notes": {"original_bigg_ids": ["adn_e"]}, "charge": 0, "formula": "C10H13N5O4", "compartment": "e", "id": "adn_e"}, {"name": "Adenosylcobalamin", "notes": {"original_bigg_ids": ["adocbl_e"]}, "charge": 0, "formula": "C72H100CoN18O17P", "compartment": "e", "id": "adocbl_e"}, {"name": "Silver", "notes": 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"C5H10N2O3S", "compartment": "e", "id": "cgly_e"}, {"name": "Choline", "notes": {"original_bigg_ids": ["chol_e"]}, "charge": 1, "formula": "C5H14NO", "compartment": "e", "id": "chol_e"}, {"name": "N,N'-diacetylchitobiose", "notes": {"original_bigg_ids": ["chtbs_e"]}, "charge": 0, "formula": "C16H28N2O11", "compartment": "e", "id": "chtbs_e"}, {"name": "Citrate", "notes": {"original_bigg_ids": ["cit_e"]}, "charge": -3, "formula": "C6H5O7", "compartment": "e", "id": "cit_e"}, {"name": "Chloride", "notes": {"original_bigg_ids": ["cl_e"]}, "charge": -1, "formula": "Cl", "compartment": "e", "id": "cl_e"}, {"name": "Chloramphenicol", "notes": {"original_bigg_ids": ["cm_e"]}, "charge": 0, "formula": "C11H12Cl2N2O5", "compartment": "e", "id": "cm_e"}, {"name": "CMP", "notes": {"original_bigg_ids": ["cmp_e"]}, "charge": -2, "formula": "C9H12N3O8P", "compartment": "e", "id": "cmp_e"}, {"name": "CO2", "notes": {"original_bigg_ids": ["co2_e"]}, "charge": 0, "formula": "CO2", "compartment": "e", "id": "co2_e"}, {"name": "Co2+", "notes": {"original_bigg_ids": ["cobalt2_e"]}, "charge": 2, "formula": "Co", "compartment": "e", "id": "cobalt2_e"}, {"name": "Core oligosaccharide lipid A diphosphate", "notes": {"original_bigg_ids": ["colipap_e"]}, "charge": -12, "formula": "C176H303N2O103P5", "compartment": "e", "id": "colipap_e"}, {"name": "Coprogen", "notes": {"original_bigg_ids": ["cpgn_e"]}, "charge": -1, "formula": "C35H52N6O13Fe", "compartment": "e", "id": "cpgn_e"}, {"name": "Coprogen unloaded (no Fe(III))", "notes": {"original_bigg_ids": ["cpgn_DASH_un_e"]}, "charge": -4, "formula": "C35H52N6O13", "compartment": "e", "id": "cpgn_un_e"}, {"name": "L-Carnitine", "notes": {"original_bigg_ids": ["crn_e"]}, "charge": 0, "formula": "C7H15NO3", "compartment": "e", "id": "crn_e"}, {"name": "D-Carnitine", "notes": {"original_bigg_ids": ["crn_DASH_D_e"]}, "charge": 0, "formula": "C7H15NO3", "compartment": "e", "id": "crn__D_e"}, {"name": "Cytosine", "notes": {"original_bigg_ids": 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{"name": "L-Methionine", "notes": {"original_bigg_ids": ["met_DASH_L_e"]}, "charge": 0, "formula": "C5H11NO2S", "compartment": "e", "id": "met__L_e"}, {"name": "L-methionine-R-sulfoxide", "notes": {"original_bigg_ids": ["metsox_DASH_R_DASH_L_e"]}, "charge": 0, "formula": "C5H11NO3S", "compartment": "e", "id": "metsox_R__L_e"}, {"name": "L-Methionine Sulfoxide", "notes": {"original_bigg_ids": ["metsox_DASH_S_DASH_L_e"]}, "charge": 0, "formula": "C5H11NO3S", "compartment": "e", "id": "metsox_S__L_e"}, {"name": "Magnesium", "notes": {"original_bigg_ids": ["mg2_e"]}, "charge": 2, "formula": "Mg", "compartment": "e", "id": "mg2_e"}, {"name": "Minocycline", "notes": {"original_bigg_ids": ["mincyc_e"]}, "charge": 0, "formula": "C23H27N3O7", "compartment": "e", "id": "mincyc_e"}, {"name": "Myo-Inositol hexakisphosphate", "notes": {"original_bigg_ids": ["minohp_e"]}, "charge": -12, "formula": "C6H6O24P6", "compartment": "e", "id": "minohp_e"}, {"name": "S-Methyl-L-methionine", "notes": 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{"name": "(O16 antigen)x4 core oligosaccharide lipid A", "notes": {"original_bigg_ids": ["o16a4colipa_e"]}, "charge": -11, "formula": "C312H523N6O200P4", "compartment": "e", "id": "o16a4colipa_e"}, {"name": "O2", "notes": {"original_bigg_ids": ["o2_e"]}, "charge": 0, "formula": "O2", "compartment": "e", "id": "o2_e"}, {"name": "Superoxide anion", "notes": {"original_bigg_ids": ["o2s_e"]}, "charge": -1, "formula": "O2", "compartment": "e", "id": "o2s_e"}, {"name": "Octadecanoate (n-C18:0)", "notes": {"original_bigg_ids": ["ocdca_e"]}, "charge": -1, "formula": "C18H35O2", "compartment": "e", "id": "ocdca_e"}, {"name": "Octadecenoate (n-C18:1)", "notes": {"original_bigg_ids": ["ocdcea_e"]}, "charge": -1, "formula": "C18H33O2", "compartment": "e", "id": "ocdcea_e"}, {"name": "Octanoate (n-C8:0)", "notes": {"original_bigg_ids": ["octa_e"]}, "charge": -1, "formula": "C8H15O2", "compartment": "e", "id": "octa_e"}, {"name": "Ornithine", "notes": {"original_bigg_ids": ["orn_e"]}, "charge": 1, 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"34dhpac_p"}, {"name": "Malonate semialdehyde", "notes": {"original_bigg_ids": ["msa_c"]}, "charge": -1, "formula": "C3H3O3", "compartment": "c", "id": "msa_c"}, {"name": "3-Aminoacrylate", "notes": {"original_bigg_ids": ["3amac_c"]}, "charge": -1, "formula": "C3H4NO2", "compartment": "c", "id": "3amac_c"}, {"name": "Trans-Dec-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["tdec2eACP_c"]}, "charge": -1, "formula": "C21H37N2O8PRS", "compartment": "c", "id": "tdec2eACP_c"}, {"name": "(R)-3-Hydroxydecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hdecACP_c"]}, "charge": -1, "formula": "C21H39N2O9PRS", "compartment": "c", "id": "3hdecACP_c"}, {"name": "Trans-Dodec-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["tddec2eACP_c"]}, "charge": -1, "formula": "C23H41N2O8PRS", "compartment": "c", "id": "tddec2eACP_c"}, {"name": "(R)-3-Hydroxydodecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hddecACP_c"]}, "charge": -1, "formula": "C23H43N2O9PRS", "compartment": "c", "id": "3hddecACP_c"}, {"name": "Trans-3-cis-5-dodecenoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["t3c5ddeceACP_c"]}, "charge": -1, "formula": "C23H39N2O8PRS", "compartment": "c", "id": "t3c5ddeceACP_c"}, {"name": "(R)-3-hydroxy-cis-dodec-5-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hcddec5eACP_c"]}, "charge": -1, "formula": "C23H41N2O9PRS", "compartment": "c", "id": "3hcddec5eACP_c"}, {"name": "(R)-3-Hydroxytetradecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hmrsACP_c"]}, "charge": -1, "formula": "C25H47N2O9PRS", "compartment": "c", "id": "3hmrsACP_c"}, {"name": "Trans-Tetradec-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["tmrs2eACP_c"]}, "charge": -1, "formula": "C25H45N2O8PRS", "compartment": "c", "id": "tmrs2eACP_c"}, {"name": "Trans-3-cis-7-myristoleoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["t3c7mrseACP_c"]}, "charge": -1, "formula": "C25H43N2O8PRS", "compartment": "c", "id": "t3c7mrseACP_c"}, {"name": "(R)-3-hydroxy-cis-myristol-7-eoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hcmrs7eACP_c"]}, "charge": -1, "formula": "C25H45N2O9PRS", "compartment": "c", "id": "3hcmrs7eACP_c"}, {"name": "Trans-Hexadec-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["tpalm2eACP_c"]}, "charge": -1, "formula": "C27H49N2O8PRS", "compartment": "c", "id": "tpalm2eACP_c"}, {"name": "R-3-hydroxypalmitoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hpalmACP_c"]}, "charge": -1, "formula": "C27H51N2O9PRS", "compartment": "c", "id": "3hpalmACP_c"}, {"name": "Trans-3-cis-9-palmitoleoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["t3c9palmeACP_c"]}, "charge": -1, "formula": "C27H47N2O8PRS", "compartment": "c", "id": "t3c9palmeACP_c"}, {"name": "(R)-3-hydroxy-cis-palm-9-eoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hcpalm9eACP_c"]}, "charge": -1, "formula": "C27H49N2O9PRS", "compartment": "c", "id": "3hcpalm9eACP_c"}, {"name": "Trans-octadec-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["toctd2eACP_c"]}, "charge": -1, "formula": "C29H53N2O8PRS", "compartment": "c", "id": "toctd2eACP_c"}, {"name": "(R)-3-Hydroxyoctadecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hoctaACP_c"]}, "charge": -1, "formula": "C29H55N2O9PRS", "compartment": "c", "id": "3hoctaACP_c"}, {"name": "(R)-3-hydroxy-cis-vacc-11-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hcvac11eACP_c"]}, "charge": -1, "formula": "C29H53N2O9PRS", "compartment": "c", "id": "3hcvac11eACP_c"}, {"name": "Trans-3-cis-11-vacceoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["t3c11vaceACP_c"]}, "charge": -1, "formula": "C29H51N2O8PRS", "compartment": "c", "id": "t3c11vaceACP_c"}, {"name": "(3R)-3-Hydroxyacyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3haACP_c"]}, "charge": -1, "formula": "C15H27N2O9PRS", "compartment": "c", "id": "3haACP_c"}, {"name": "But-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["but2eACP_c"]}, "charge": -1, "formula": "C15H25N2O8PRS", "compartment": "c", "id": "but2eACP_c"}, {"name": "(R)-3-Hydroxyhexanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hhexACP_c"]}, "charge": -1, "formula": "C17H31N2O9PRS", "compartment": "c", "id": "3hhexACP_c"}, {"name": "Trans-Hex-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["thex2eACP_c"]}, "charge": -1, "formula": "C17H29N2O8PRS", "compartment": "c", "id": "thex2eACP_c"}, {"name": "(R)-3-Hydroxyoctanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hoctACP_c"]}, "charge": -1, "formula": "C19H35N2O9PRS", "compartment": "c", "id": "3hoctACP_c"}, {"name": "Trans-Oct-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["toct2eACP_c"]}, "charge": -1, "formula": "C19H33N2O8PRS", "compartment": "c", "id": "toct2eACP_c"}, {"name": "O2", "notes": {"original_bigg_ids": ["o2_c"]}, "charge": 0, "formula": "O2", "compartment": "c", "id": "o2_c"}, {"name": "2,3-dihydroxicinnamic acid", "notes": {"original_bigg_ids": ["dhcinnm_c"]}, "charge": -1, "formula": "C9H7O4", "compartment": "c", "id": "dhcinnm_c"}, {"name": "3-hydroxycinnamic acid", "notes": {"original_bigg_ids": ["3hcinnm_c"]}, "charge": -1, "formula": "C9H7O3", "compartment": "c", "id": "3hcinnm_c"}, {"name": "3-(2,3-Dihydroxyphenyl)propanoate", "notes": {"original_bigg_ids": ["dhpppn_c"]}, "charge": -1, "formula": "C9H9O4", "compartment": "c", "id": "dhpppn_c"}, {"name": "3-(3-hydroxy-phenyl)propionate", "notes": {"original_bigg_ids": ["3hpppn_c"]}, "charge": -1, "formula": "C9H9O3", "compartment": "c", "id": "3hpppn_c"}, {"name": "3-Hydroxypropanoate", "notes": {"original_bigg_ids": ["3hpp_p"]}, "charge": -1, "formula": "C3H5O3", "compartment": "p", "id": "3hpp_p"}, {"name": "3-Hydroxypropanoate", "notes": {"original_bigg_ids": ["3hpp_c"]}, "charge": -1, "formula": "C3H5O3", "compartment": "c", "id": "3hpp_c"}, {"name": "3-keto-L-gulonate-6-phosphate", "notes": {"original_bigg_ids": ["3dhgulnp_c"]}, "charge": -3, "formula": "C6H8O10P", "compartment": "c", "id": "3dhgulnp_c"}, {"name": "3-Dehydro-L-gulonate", "notes": {"original_bigg_ids": ["3dhguln_c"]}, "charge": -1, "formula": "C6H9O7", "compartment": "c", "id": "3dhguln_c"}, {"name": "Phosphate", "notes": {"original_bigg_ids": ["pi_p"]}, "charge": -2, "formula": "HO4P", "compartment": "p", "id": "pi_p"}, {"name": "Uridine", "notes": {"original_bigg_ids": ["uri_p"]}, "charge": 0, "formula": "C9H12N2O6", "compartment": "p", "id": "uri_p"}, {"name": "Cytidine", "notes": {"original_bigg_ids": ["cytd_p"]}, "charge": 0, "formula": "C9H13N3O5", "compartment": "p", "id": "cytd_p"}, {"name": "Adenosine", "notes": {"original_bigg_ids": ["adn_p"]}, "charge": 0, "formula": "C10H13N5O4", "compartment": "p", "id": "adn_p"}, {"name": "Guanosine", "notes": {"original_bigg_ids": ["gsn_p"]}, "charge": 0, "formula": "C10H13N5O5", "compartment": "p", "id": "gsn_p"}, {"name": "3-Oxodecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3odecACP_c"]}, "charge": -1, "formula": "C21H37N2O9PRS", "compartment": "c", "id": "3odecACP_c"}, {"name": "3-Oxododecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3oddecACP_c"]}, "charge": -1, "formula": "C23H41N2O9PRS", "compartment": "c", "id": "3oddecACP_c"}, {"name": "3-oxo-cis-dodec-5-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3ocddec5eACP_c"]}, "charge": -1, "formula": "C23H39N2O9PRS", "compartment": "c", "id": "3ocddec5eACP_c"}, {"name": "3-Oxotetradecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3omrsACP_c"]}, "charge": -1, "formula": "C25H45N2O9PRS", "compartment": "c", "id": "3omrsACP_c"}, {"name": "3-oxo-cis-myristol-7-eoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3ocmrs7eACP_c"]}, "charge": -1, "formula": "C25H43N2O9PRS", "compartment": "c", "id": "3ocmrs7eACP_c"}, {"name": "3-Oxohexadecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3opalmACP_c"]}, "charge": -1, "formula": "C27H49N2O9PRS", "compartment": "c", "id": "3opalmACP_c"}, {"name": "3-oxo-cis-palm-9-eoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3ocpalm9eACP_c"]}, "charge": -1, "formula": "C27H47N2O9PRS", "compartment": "c", "id": "3ocpalm9eACP_c"}, {"name": "3-Oxooctadecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3ooctdACP_c"]}, "charge": -1, "formula": "C29H53N2O9PRS", "compartment": "c", "id": "3ooctdACP_c"}, {"name": "3-oxo-cis-vacc-11-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3ocvac11eACP_c"]}, "charge": -1, "formula": "C29H51N2O9PRS", "compartment": "c", "id": "3ocvac11eACP_c"}, {"name": "Acetoacetyl-ACP", "notes": {"original_bigg_ids": ["actACP_c"]}, "charge": -1, "formula": "C15H25N2O9PRS", "compartment": "c", "id": "actACP_c"}, {"name": "3-Oxohexanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3ohexACP_c"]}, "charge": -1, "formula": "C17H29N2O9PRS", "compartment": "c", "id": "3ohexACP_c"}, {"name": "3-Oxooctanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3ooctACP_c"]}, "charge": -1, "formula": "C19H33N2O9PRS", "compartment": "c", "id": "3ooctACP_c"}, {"name": "Acyl carrier protein", "notes": {"original_bigg_ids": ["ACP_c"]}, "charge": -1, "formula": "C11H21N2O7PRS", "compartment": "c", "id": "ACP_c"}, {"name": "CO2", "notes": {"original_bigg_ids": ["co2_c"]}, "charge": 0, "formula": "CO2", "compartment": "c", "id": "co2_c"}, {"name": "Octanoyl-ACP (n-C8:0ACP)", "notes": {"original_bigg_ids": ["ocACP_c"]}, "charge": -1, "formula": "C19H35N2O8PRS", "compartment": "c", "id": "ocACP_c"}, {"name": "Malonyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["malACP_c"]}, "charge": -2, "formula": "C14H22N2O10PRS", "compartment": "c", "id": "malACP_c"}, {"name": "Decanoyl-ACP (n-C10:0ACP)", "notes": {"original_bigg_ids": ["dcaACP_c"]}, "charge": -1, "formula": "C21H39N2O8PRS", "compartment": "c", "id": "dcaACP_c"}, {"name": "Cis-dec-3-enoyl-[acyl-carrier protein] (n-C10:1)", "notes": {"original_bigg_ids": ["cdec3eACP_c"]}, "charge": -1, "formula": "C21H37N2O8PRS", "compartment": "c", "id": "cdec3eACP_c"}, {"name": "Dodecanoyl-ACP (n-C12:0ACP)", "notes": {"original_bigg_ids": ["ddcaACP_c"]}, "charge": -1, "formula": "C23H43N2O8PRS", "compartment": "c", "id": "ddcaACP_c"}, {"name": "Cis-dodec-5-enoyl-[acyl-carrier protein] (n-C12:1)", "notes": {"original_bigg_ids": ["cddec5eACP_c"]}, "charge": -1, "formula": "C23H41N2O8PRS", "compartment": "c", "id": "cddec5eACP_c"}, {"name": "Myristoyl-ACP (n-C14:0ACP)", "notes": {"original_bigg_ids": ["myrsACP_c"]}, "charge": -1, "formula": "C25H47N2O8PRS", "compartment": "c", "id": "myrsACP_c"}, {"name": "Cis-tetradec-7-enoyl-[acyl-carrier protein] (n-C14:1)", "notes": {"original_bigg_ids": ["tdeACP_c"]}, "charge": -1, "formula": "C25H45N2O8PRS", "compartment": "c", "id": "tdeACP_c"}, {"name": "Palmitoyl-ACP (n-C16:0ACP)", "notes": {"original_bigg_ids": ["palmACP_c"]}, "charge": -1, "formula": "C27H51N2O8PRS", "compartment": "c", "id": "palmACP_c"}, {"name": "Cis-hexadec-9-enoyl-[acyl-carrier protein] (n-C16:1)", "notes": {"original_bigg_ids": ["hdeACP_c"]}, "charge": -1, "formula": "C27H49N2O8PRS", "compartment": "c", "id": "hdeACP_c"}, {"name": "Butyryl-ACP (n-C4:0ACP)", "notes": {"original_bigg_ids": ["butACP_c"]}, "charge": -1, "formula": "C15H27N2O8PRS", "compartment": "c", "id": "butACP_c"}, {"name": "Hexanoyl-ACP (n-C6:0ACP)", "notes": {"original_bigg_ids": ["hexACP_c"]}, "charge": -1, "formula": "C17H31N2O8PRS", "compartment": "c", "id": "hexACP_c"}, {"name": "L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate", "notes": {"original_bigg_ids": ["LalaDgluMdap_p"]}, "charge": -1, "formula": "C15H25N4O8", "compartment": "p", "id": "LalaDgluMdap_p"}, {"name": "L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate", "notes": {"original_bigg_ids": ["LalaDgluMdap_c"]}, "charge": -1, "formula": "C15H25N4O8", "compartment": "c", "id": "LalaDgluMdap_c"}, {"name": "O2", "notes": {"original_bigg_ids": ["o2_p"]}, "charge": 0, "formula": "O2", "compartment": "p", "id": "o2_p"}, {"name": "Dopamine", "notes": {"original_bigg_ids": ["dopa_p"]}, "charge": 1, "formula": "C8H12NO2", "compartment": "p", "id": "dopa_p"}, {"name": "Ammonium", "notes": {"original_bigg_ids": ["nh4_p"]}, "charge": 1, "formula": "H4N", "compartment": "p", "id": "nh4_p"}, {"name": "Hydrogen peroxide", "notes": {"original_bigg_ids": ["h2o2_p"]}, "charge": 0, "formula": "H2O2", "compartment": "p", "id": "h2o2_p"}, {"name": "4-Hydroxyphenylacetaldehyde", "notes": {"original_bigg_ids": ["4hoxpacd_p"]}, "charge": 0, "formula": "C8H8O2", "compartment": "p", "id": "4hoxpacd_p"}, {"name": "O-Phospho-4-hydroxy-L-threonine", "notes": {"original_bigg_ids": ["phthr_c"]}, "charge": -2, "formula": "C4H8NO7P", "compartment": "c", "id": "phthr_c"}, {"name": "4-Hydroxy-L-threonine", "notes": {"original_bigg_ids": ["4hthr_c"]}, "charge": 0, "formula": "C4H9NO4", "compartment": "c", "id": "4hthr_c"}, {"name": "L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine", "notes": {"original_bigg_ids": ["LalaDgluMdapDala_c"]}, "charge": -1, "formula": "C18H30N5O9", "compartment": "c", "id": "LalaDgluMdapDala_c"}, {"name": "D-Alanine", "notes": {"original_bigg_ids": ["ala_DASH_D_c"]}, "charge": 0, "formula": "C3H7NO2", "compartment": "c", "id": "ala__D_c"}, {"name": "L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine", "notes": {"original_bigg_ids": ["LalaDgluMdapDala_p"]}, "charge": -1, "formula": "C18H30N5O9", "compartment": "p", "id": "LalaDgluMdapDala_p"}, {"name": "D-Alanine", "notes": {"original_bigg_ids": ["ala_DASH_D_p"]}, "charge": 0, "formula": "C3H7NO2", "compartment": "p", "id": "ala__D_p"}, {"name": "5-Dehydro-D-gluconate", "notes": {"original_bigg_ids": ["5dglcn_c"]}, "charge": -1, "formula": "C6H9O7", "compartment": "c", "id": "5dglcn_c"}, {"name": "5-Dehydro-D-gluconate", "notes": {"original_bigg_ids": ["5dglcn_p"]}, "charge": -1, "formula": "C6H9O7", "compartment": "p", "id": "5dglcn_p"}, {"name": "Adenine", "notes": {"original_bigg_ids": ["ade_c"]}, "charge": 0, "formula": "C5H5N5", "compartment": "c", "id": "ade_c"}, {"name": "5'-Deoxyadenosine", "notes": {"original_bigg_ids": ["dad_DASH_5_c"]}, "charge": 0, "formula": "C10H13N5O3", "compartment": "c", "id": "dad_5_c"}, {"name": "5-Methylthio-D-ribose", "notes": {"original_bigg_ids": ["5mtr_p"]}, "charge": 0, "formula": "C6H12O4S", "compartment": "p", "id": "5mtr_p"}, {"name": "5-Methylthio-D-ribose", "notes": {"original_bigg_ids": ["5mtr_c"]}, "charge": 0, "formula": "C6H12O4S", "compartment": "c", "id": "5mtr_c"}, {"name": "D-Arabinose 5-phosphate", "notes": {"original_bigg_ids": ["ara5p_c"]}, "charge": -2, "formula": "C5H9O8P", "compartment": "c", "id": "ara5p_c"}, {"name": "D-Ribulose 5-phosphate", "notes": {"original_bigg_ids": ["ru5p_DASH_D_c"]}, "charge": -2, 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"formula": "C21H44NO7P1", "compartment": "p", "id": "1agpe160_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1)", "notes": {"original_bigg_ids": ["1agpe161_p"]}, "charge": 0, "formula": "C21H42NO7P1", "compartment": "p", "id": "1agpe161_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)", "notes": {"original_bigg_ids": ["1agpe180_p"]}, "charge": 0, "formula": "C23H48NO7P1", "compartment": "p", "id": "1agpe180_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1)", "notes": {"original_bigg_ids": ["1agpe181_p"]}, "charge": 0, "formula": "C23H46NO7P1", "compartment": "p", "id": "1agpe181_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)", "notes": {"original_bigg_ids": ["1agpg120_p"]}, "charge": -1, "formula": "C18H36O9P1", "compartment": "p", "id": "1agpg120_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)", "notes": {"original_bigg_ids": ["1agpg140_p"]}, "charge": -1, "formula": "C20H40O9P1", "compartment": "p", "id": "1agpg140_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)", "notes": {"original_bigg_ids": ["1agpg141_p"]}, "charge": -1, "formula": "C20H38O9P1", "compartment": "p", "id": "1agpg141_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0)", "notes": {"original_bigg_ids": ["1agpg160_p"]}, "charge": -1, "formula": "C22H44O9P1", "compartment": "p", "id": "1agpg160_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1)", "notes": {"original_bigg_ids": ["1agpg161_p"]}, "charge": -1, "formula": "C22H42O9P1", "compartment": "p", "id": "1agpg161_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0)", "notes": {"original_bigg_ids": ["1agpg180_p"]}, "charge": -1, "formula": "C24H48O9P1", "compartment": "p", "id": "1agpg180_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1)", "notes": {"original_bigg_ids": ["1agpg181_p"]}, "charge": -1, "formula": "C24H46O9P1", "compartment": "p", "id": "1agpg181_p"}, {"name": "Acyl phosphatidylglycerol (n-C12:0)", 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phosphatidylglycerol (n-C18:1)", "notes": {"original_bigg_ids": ["apg181_c"]}, "charge": -1, "formula": "C60H110O11P", "compartment": "c", "id": "apg181_c"}, {"name": "TRNA(Lys)", "notes": {"original_bigg_ids": ["trnalys_c"]}, "charge": 0, "formula": "R", "compartment": "c", "id": "trnalys_c"}, {"name": "L-Lysine-tRNA (Lys)", "notes": {"original_bigg_ids": ["lystrna_c"]}, "charge": 2, "formula": "C6H14N2OR", "compartment": "c", "id": "lystrna_c"}, {"name": "L-Xylulose", "notes": {"original_bigg_ids": ["xylu_DASH_L_c"]}, "charge": 0, "formula": "C5H10O5", "compartment": "c", "id": "xylu__L_c"}, {"name": "L-Lyxose", "notes": {"original_bigg_ids": ["lyx_DASH_L_c"]}, "charge": 0, "formula": "C5H10O5", "compartment": "c", "id": "lyx__L_c"}, {"name": "L-Lyxose", "notes": {"original_bigg_ids": ["lyx_DASH_L_p"]}, "charge": 0, "formula": "C5H10O5", "compartment": "p", "id": "lyx__L_p"}, {"name": "D-Mannitol 1-phosphate", "notes": {"original_bigg_ids": ["mnl1p_c"]}, "charge": -2, "formula": "C6H13O9P", "compartment": "c", "id": "mnl1p_c"}, {"name": "Malonyl-CoA methyl ester", "notes": {"original_bigg_ids": ["malcoame_c"]}, "charge": -4, "formula": "C25H36N7O19P3S", "compartment": "c", "id": "malcoame_c"}, {"name": "D-Malate", "notes": {"original_bigg_ids": ["mal_DASH_D_c"]}, "charge": -2, "formula": "C4H4O5", "compartment": "c", "id": "mal__D_c"}, {"name": "D-Malate", "notes": {"original_bigg_ids": ["mal_DASH_D_p"]}, "charge": -2, "formula": "C4H4O5", "compartment": "p", "id": "mal__D_p"}, {"name": "Acetyl-maltose", "notes": {"original_bigg_ids": ["acmalt_c"]}, "charge": 0, "formula": "C14H24O12", "compartment": "c", "id": "acmalt_c"}, {"name": "Maltopentaose", "notes": {"original_bigg_ids": ["maltpt_p"]}, "charge": 0, "formula": "C30H52O26", "compartment": "p", "id": "maltpt_p"}, {"name": "Maltotriose", "notes": {"original_bigg_ids": ["malttr_p"]}, "charge": 0, "formula": "C18H32O16", "compartment": "p", "id": "malttr_p"}, {"name": "Maltotetraose", "notes": 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"KDO-lipid IV(A)", "notes": {"original_bigg_ids": ["kdolipid4_c"]}, "charge": -5, "formula": "C76H137N2O30P2", "compartment": "c", "id": "kdolipid4_c"}, {"name": "Molybdate", "notes": {"original_bigg_ids": ["mobd_p"]}, "charge": -2, "formula": "MoO4", "compartment": "p", "id": "mobd_p"}, {"name": "Molybdopterin", "notes": {"original_bigg_ids": ["mpt_c"]}, "charge": -2, "formula": "C10H10N5O6PS2Cu", "compartment": "c", "id": "mpt_c"}, {"name": "Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-ala-D-glu-meso-2,6-diaminopimeloyl-D-ala-D-ala", "notes": {"original_bigg_ids": ["uaagmda_c"]}, "charge": -4, "formula": "C95H152N8O28P2", "compartment": "c", "id": "uaagmda_c"}, {"name": "MoaD Protein with carboxylate", "notes": {"original_bigg_ids": ["moadcoo_c"]}, "charge": -1, "formula": "C1O2X", "compartment": "c", "id": "moadcoo_c"}, {"name": "Methanesulfonate", "notes": {"original_bigg_ids": ["mso3_p"]}, "charge": -1, "formula": "CH3O3S", "compartment": "p", "id": "mso3_p"}, {"name": "N-Methyltryptophan", "notes": {"original_bigg_ids": ["Nmtrp_c"]}, "charge": 0, "formula": "C12H14N2O2", "compartment": "c", "id": "Nmtrp_c"}, {"name": "Nitrous oxide", "notes": {"original_bigg_ids": ["n2o_p"]}, "charge": 0, "formula": "N2O", "compartment": "p", "id": "n2o_p"}, {"name": "Nicotinate", "notes": {"original_bigg_ids": ["nac_p"]}, "charge": -1, "formula": "C6H4NO2", "compartment": "p", "id": "nac_p"}, {"name": "Nicotinate", "notes": {"original_bigg_ids": ["nac_c"]}, "charge": -1, "formula": "C6H4NO2", "compartment": "c", "id": "nac_c"}, {"name": "NMN", "notes": {"original_bigg_ids": ["nmn_c"]}, "charge": -1, "formula": "C11H14N2O8P", "compartment": "c", "id": "nmn_c"}, {"name": "Nicotinamide", "notes": {"original_bigg_ids": ["ncam_c"]}, "charge": 0, "formula": "C6H6N2O", "compartment": "c", "id": "ncam_c"}, {"name": "Deamino-NAD+", "notes": {"original_bigg_ids": ["dnad_c"]}, "charge": -2, "formula": "C21H24N6O15P2", "compartment": "c", "id": "dnad_c"}, {"name": "Nicotinate D-ribonucleotide", "notes": {"original_bigg_ids": ["nicrnt_c"]}, "charge": -2, "formula": "C11H12NO9P", "compartment": "c", "id": "nicrnt_c"}, {"name": "DUDP", "notes": {"original_bigg_ids": ["dudp_c"]}, "charge": -3, "formula": "C9H11N2O11P2", "compartment": "c", "id": "dudp_c"}, {"name": "Nickel", "notes": {"original_bigg_ids": ["ni2_p"]}, "charge": 2, "formula": "Ni", "compartment": "p", "id": "ni2_p"}, {"name": "NMN", "notes": {"original_bigg_ids": ["nmn_p"]}, "charge": -1, "formula": "C11H14N2O8P", "compartment": "p", "id": "nmn_p"}, {"name": "N1-(5-Phospho-alpha-D-ribosyl)-5,6-dimethylbenzimidazole", "notes": {"original_bigg_ids": ["5prdmbz_c"]}, "charge": -2, "formula": "C14H17N2O7P", "compartment": "c", "id": "5prdmbz_c"}, {"name": "5,6-Dimethylbenzimidazole", "notes": {"original_bigg_ids": ["dmbzid_c"]}, "charge": 0, "formula": "C9H10N2", "compartment": "c", "id": "dmbzid_c"}, {"name": "Quinolinate", "notes": {"original_bigg_ids": ["quln_c"]}, "charge": -2, "formula": "C7H3NO4", "compartment": "c", "id": "quln_c"}, {"name": "Nitrite", "notes": {"original_bigg_ids": ["no2_p"]}, "charge": -1, "formula": "NO2", "compartment": "p", "id": "no2_p"}, {"name": "Nitrite", "notes": {"original_bigg_ids": ["no2_c"]}, "charge": -1, "formula": "NO2", "compartment": "c", "id": "no2_c"}, {"name": "Nitrate", "notes": {"original_bigg_ids": ["no3_p"]}, "charge": -1, "formula": "NO3", "compartment": "p", "id": "no3_p"}, {"name": "Nitrate", "notes": {"original_bigg_ids": ["no3_c"]}, "charge": -1, "formula": "NO3", "compartment": "c", "id": "no3_c"}, {"name": "Novobiocin", "notes": {"original_bigg_ids": ["novbcn_p"]}, "charge": 0, "formula": "C31H36N2O11", "compartment": "p", "id": "novbcn_p"}, {"name": "Nitric oxide", "notes": {"original_bigg_ids": ["no_p"]}, "charge": 0, "formula": "NO", "compartment": "p", "id": "no_p"}, {"name": "Xanthosine", "notes": {"original_bigg_ids": ["xtsn_c"]}, "charge": 0, "formula": "C10H12N4O6", "compartment": "c", "id": "xtsn_c"}, {"name": "Xanthosine", "notes": {"original_bigg_ids": ["xtsn_p"]}, "charge": 0, "formula": "C10H12N4O6", "compartment": "p", "id": "xtsn_p"}, {"name": "Xanthosine 5'-phosphate", "notes": {"original_bigg_ids": ["xmp_p"]}, "charge": -2, "formula": "C10H11N4O9P", "compartment": "p", "id": "xmp_p"}, {"name": "DIMP", "notes": {"original_bigg_ids": ["dimp_c"]}, "charge": -2, "formula": "C10H11N4O7P", "compartment": "c", "id": "dimp_c"}, {"name": "UMP", "notes": {"original_bigg_ids": ["ump_p"]}, "charge": -2, "formula": "C9H11N2O9P", "compartment": "p", "id": "ump_p"}, {"name": "Thymidine", "notes": {"original_bigg_ids": ["thymd_c"]}, "charge": 0, "formula": "C10H14N2O5", "compartment": "c", "id": "thymd_c"}, {"name": "Thymidine", "notes": {"original_bigg_ids": ["thymd_p"]}, "charge": 0, "formula": "C10H14N2O5", "compartment": "p", "id": "thymd_p"}, {"name": "DIDP", "notes": {"original_bigg_ids": ["didp_c"]}, "charge": -3, "formula": "C10H11N4O10P2", "compartment": "c", "id": "didp_c"}, {"name": "XDP", "notes": {"original_bigg_ids": ["xdp_c"]}, "charge": -3, "formula": "C10H11N4O12P2", "compartment": "c", "id": "xdp_c"}, {"name": "(O16 antigen)x4 core oligosaccharide lipid A", "notes": {"original_bigg_ids": ["o16a4colipa_p"]}, "charge": -11, "formula": "C312H523N6O200P4", "compartment": "p", "id": "o16a4colipa_p"}, {"name": "Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate", "notes": {"original_bigg_ids": ["ragund_c"]}, "charge": -2, "formula": "C69H113N1O16P2", "compartment": "c", "id": "ragund_c"}, {"name": "O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate", "notes": {"original_bigg_ids": ["aragund_c"]}, "charge": -2, "formula": "C71H115N1O17P2", "compartment": "c", "id": "aragund_c"}, {"name": "O16 antigen undecaprenyl diphosphate", "notes": {"original_bigg_ids": ["o16aund_c"]}, "charge": -2, "formula": "C89H145N1O32P2", "compartment": "c", "id": "o16aund_c"}, {"name": "Galactofuranosyl-glucosyl-O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate", "notes": {"original_bigg_ids": ["gfgaragund_c"]}, "charge": -2, "formula": "C83H135N1O27P2", "compartment": "c", "id": "gfgaragund_c"}, {"name": "Superoxide anion", "notes": {"original_bigg_ids": ["o2s_p"]}, "charge": -1, "formula": "O2", "compartment": "p", "id": "o2s_p"}, {"name": "3-Hydroxyglutaryl-[acyl-carrier protein] methyl ester", "notes": {"original_bigg_ids": ["hgmeACP_c"]}, "charge": -1, "formula": "C17H29N2O11PRS", "compartment": "c", "id": "hgmeACP_c"}, {"name": "3-Oxo-glutaryl-[acyl-carrier protein] methyl ester", "notes": {"original_bigg_ids": ["ogmeACP_c"]}, "charge": -1, "formula": "C17H27N2O11PRS", "compartment": "c", "id": "ogmeACP_c"}, {"name": "2-Oxo-3-hydroxy-4-phosphobutanoate", "notes": {"original_bigg_ids": ["ohpb_c"]}, "charge": -3, "formula": "C4H4O8P", "compartment": "c", "id": "ohpb_c"}, {"name": "2-Octaprenyl-6-methoxyphenol", "notes": {"original_bigg_ids": ["2omph_c"]}, "charge": 0, "formula": "C47H72O2", "compartment": "c", "id": "2omph_c"}, {"name": "2-Octaprenyl-3-methyl-6-methoxy- 1,4-benzoquinol", "notes": {"original_bigg_ids": ["2ommbl_c"]}, "charge": 0, "formula": "C48H74O3", "compartment": "c", "id": "2ommbl_c"}, {"name": "2-Octaprenyl-6-methoxy-1,4-benzoquinol", "notes": {"original_bigg_ids": ["2ombzl_c"]}, "charge": 0, "formula": "C47H72O3", "compartment": "c", "id": "2ombzl_c"}, {"name": "Orotidine 5'-phosphate", "notes": {"original_bigg_ids": ["orot5p_c"]}, "charge": -3, "formula": "C10H10N2O11P", "compartment": "c", "id": "orot5p_c"}, {"name": "2-Octaprenylphenol", "notes": {"original_bigg_ids": ["2oph_c"]}, "charge": 0, "formula": "C46H70O", "compartment": "c", "id": "2oph_c"}, {"name": "3-Hydroxypimeloyl-[acyl-carrier protein] methyl ester", "notes": {"original_bigg_ids": ["hpmeACP_c"]}, "charge": -1, "formula": "C19H33N2O11PRS", "compartment": "c", "id": "hpmeACP_c"}, {"name": "3-Oxo-pimeloyl-[acyl-carrier protein] methyl ester", "notes": {"original_bigg_ids": ["opmeACP_c"]}, "charge": -1, "formula": "C19H31N2O11PRS", "compartment": "c", "id": "opmeACP_c"}, {"name": "Orotate", "notes": {"original_bigg_ids": ["orot_p"]}, "charge": -1, "formula": "C5H3N2O4", "compartment": "p", "id": "orot_p"}, {"name": "Oxalureate", "notes": {"original_bigg_ids": ["oxur_c"]}, "charge": -1, "formula": "C3H3N2O4", "compartment": "c", "id": "oxur_c"}, {"name": "Phenylacetaldehyde", "notes": {"original_bigg_ids": ["pacald_p"]}, "charge": 0, "formula": "C8H8O", "compartment": "p", "id": "pacald_p"}, {"name": "(R)-Pantothenate", "notes": {"original_bigg_ids": ["pnto_DASH_R_c"]}, "charge": -1, "formula": "C9H16NO5", "compartment": "c", "id": "pnto__R_c"}, {"name": "UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine", "notes": {"original_bigg_ids": ["ugmda_c"]}, "charge": -4, "formula": "C41H61N9O28P2", "compartment": "c", "id": "ugmda_c"}, {"name": "Undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine", "notes": {"original_bigg_ids": ["uagmda_c"]}, "charge": -4, "formula": "C87H139N7O23P2", "compartment": "c", "id": "uagmda_c"}, {"name": "Pyridoxine 5'-phosphate", "notes": {"original_bigg_ids": ["pdx5p_c"]}, "charge": -2, "formula": "C8H10NO6P", "compartment": "c", "id": "pdx5p_c"}, {"name": "Phosphatidylethanolamine (didodecanoyl, n-C12:0)", "notes": {"original_bigg_ids": ["pe120_p"]}, "charge": 0, "formula": "C29H58N1O8P1", "compartment": "p", "id": "pe120_p"}, {"name": "Phosphatidylethanolamine (ditetradecanoyl, n-C14:0)", "notes": {"original_bigg_ids": ["pe140_p"]}, "charge": 0, "formula": "C33H66N1O8P1", "compartment": "p", "id": "pe140_p"}, {"name": "Phosphatidylethanolamine (ditetradec-7-enoyl, n-C14:1)", "notes": {"original_bigg_ids": ["pe141_p"]}, "charge": 0, "formula": "C33H62N1O8P1", "compartment": "p", "id": "pe141_p"}, {"name": "Phosphatidylethanolamine (dioctadecanoyl, n-C18:0)", "notes": {"original_bigg_ids": ["pe180_p"]}, "charge": 0, "formula": "C41H82N1O8P1", "compartment": "p", "id": "pe180_p"}, {"name": "Phenethylamine", "notes": {"original_bigg_ids": ["peamn_p"]}, "charge": 1, "formula": "C8H12N", "compartment": "p", "id": "peamn_p"}, {"name": "D-Tagatose 1,6-biphosphate", "notes": {"original_bigg_ids": ["tagdp_DASH_D_c"]}, "charge": -4, "formula": "C6H10O12P2", "compartment": "c", "id": "tagdp__D_c"}, {"name": "Sedoheptulose 7-phosphate", "notes": {"original_bigg_ids": ["s7p_c"]}, "charge": -2, "formula": "C7H13O10P", "compartment": "c", "id": "s7p_c"}, {"name": "3-Phosphohydroxypyruvate", "notes": {"original_bigg_ids": ["3php_c"]}, "charge": -3, "formula": "C3H2O7P", "compartment": "c", "id": "3php_c"}, {"name": "2-Phosphoglycolate", "notes": {"original_bigg_ids": ["2pglyc_c"]}, "charge": -3, "formula": "C2H2O6P", "compartment": "c", "id": "2pglyc_c"}, {"name": "Phosphatidylglycerophosphate (didodecanoyl, n-C12:0)", "notes": {"original_bigg_ids": ["pgp120_p"]}, "charge": -3, "formula": "C30H57O13P2", "compartment": "p", "id": "pgp120_p"}, {"name": "Phosphatidylglycerophosphate (didodecanoyl, n-C12:0)", "notes": {"original_bigg_ids": ["pgp120_c"]}, "charge": -3, "formula": "C30H57O13P2", "compartment": "c", "id": "pgp120_c"}, {"name": "Phosphatidylglycerophosphate (ditetradecanoyl, n-C14:0)", "notes": {"original_bigg_ids": ["pgp140_c"]}, "charge": -3, "formula": "C34H65O13P2", "compartment": "c", "id": "pgp140_c"}, {"name": "Phosphatidylglycerophosphate (ditetradecanoyl, n-C14:0)", "notes": {"original_bigg_ids": ["pgp140_p"]}, "charge": -3, "formula": "C34H65O13P2", "compartment": "p", "id": "pgp140_p"}, {"name": "Phosphatidylglycerophosphate (ditetradec-7-enoyl, n-C14:1)", "notes": {"original_bigg_ids": ["pgp141_c"]}, "charge": -3, "formula": "C34H61O13P2", "compartment": "c", "id": "pgp141_c"}, {"name": "Phosphatidylglycerophosphate (ditetradec-7-enoyl, n-C14:1)", "notes": {"original_bigg_ids": ["pgp141_p"]}, "charge": -3, "formula": "C34H61O13P2", "compartment": "p", "id": "pgp141_p"}, {"name": "Phosphatidylglycerophosphate (dihexadecanoyl, n-C16:0)", "notes": {"original_bigg_ids": ["pgp160_p"]}, "charge": -3, "formula": "C38H73O13P2", "compartment": "p", "id": "pgp160_p"}, {"name": "Phosphatidylglycerophosphate (dihexadecanoyl, n-C16:0)", "notes": {"original_bigg_ids": ["pgp160_c"]}, "charge": -3, "formula": "C38H73O13P2", "compartment": "c", "id": "pgp160_c"}, {"name": "Phosphatidylglycerophosphate (dihexadec-9-enoyl, n-C16:1)", "notes": {"original_bigg_ids": ["pgp161_c"]}, "charge": -3, "formula": "C38H69O13P2", "compartment": "c", "id": "pgp161_c"}, {"name": "Phosphatidylglycerophosphate (dihexadec-9-enoyl, n-C16:1)", "notes": {"original_bigg_ids": ["pgp161_p"]}, "charge": -3, "formula": "C38H69O13P2", "compartment": "p", "id": "pgp161_p"}, {"name": "Phosphatidylglycerophosphate (dioctadecanoyl, n-C18:0)", "notes": {"original_bigg_ids": ["pgp180_p"]}, "charge": -3, "formula": "C42H81O13P2", "compartment": "p", "id": "pgp180_p"}, {"name": "Phosphatidylglycerophosphate (dioctadecanoyl, n-C18:0)", "notes": {"original_bigg_ids": ["pgp180_c"]}, "charge": -3, "formula": "C42H81O13P2", "compartment": "c", "id": "pgp180_c"}, {"name": "Phosphatidylglycerophosphate (dioctadec-11-enoyl, n-C18:1)", "notes": {"original_bigg_ids": ["pgp181_c"]}, "charge": -3, "formula": "C42H77O13P2", "compartment": "c", "id": "pgp181_c"}, {"name": "Phosphatidylglycerophosphate (dioctadec-11-enoyl, n-C18:1)", "notes": {"original_bigg_ids": ["pgp181_p"]}, "charge": -3, "formula": "C42H77O13P2", "compartment": "p", "id": "pgp181_p"}, {"name": "Protoheme", "notes": {"original_bigg_ids": ["pheme_p"]}, "charge": -2, "formula": "C34H30FeN4O4", "compartment": "p", "id": "pheme_p"}, {"name": "Phenylpyruvate", "notes": {"original_bigg_ids": ["phpyr_c"]}, "charge": -1, "formula": "C9H7O3", "compartment": "c", "id": "phpyr_c"}, {"name": "TRNA(Phe)", "notes": {"original_bigg_ids": ["trnaphe_c"]}, "charge": 0, "formula": "R", "compartment": "c", "id": "trnaphe_c"}, {"name": "L-Phenylalanyl-tRNA(Phe)", "notes": {"original_bigg_ids": ["phetrna_c"]}, "charge": 1, "formula": "C9H10NOR", "compartment": "c", "id": "phetrna_c"}, {"name": "L-Phenylalanine", "notes": {"original_bigg_ids": ["phe_DASH_L_p"]}, "charge": 0, "formula": "C9H11NO2", "compartment": "p", "id": "phe__L_p"}, {"name": "4-(1-D-Ribitylamino)-5-aminouracil", "notes": {"original_bigg_ids": ["4r5au_c"]}, "charge": 0, "formula": "C9H16N4O6", "compartment": "c", "id": "4r5au_c"}, {"name": "D-4'-Phosphopantothenate", "notes": {"original_bigg_ids": ["4ppan_c"]}, "charge": -3, "formula": "C9H15NO8P", "compartment": "c", "id": "4ppan_c"}, {"name": "(R)-Pantothenate", "notes": {"original_bigg_ids": ["pnto_DASH_R_p"]}, "charge": -1, "formula": "C9H16NO5", "compartment": "p", "id": "pnto__R_p"}, {"name": "Peroxyaminoacrylate", "notes": {"original_bigg_ids": ["poaac_c"]}, "charge": 0, "formula": "C3H5NO3", "compartment": "c", "id": "poaac_c"}, {"name": "Propanoyl phosphate", "notes": {"original_bigg_ids": ["ppap_c"]}, "charge": -2, "formula": "C3H5O5P", "compartment": "c", "id": "ppap_c"}, {"name": "Propanal", "notes": {"original_bigg_ids": ["ppal_p"]}, "charge": 0, "formula": "C3H6O", "compartment": "p", "id": "ppal_p"}, {"name": "Propionate (n-C3:0)", "notes": {"original_bigg_ids": ["ppa_p"]}, "charge": -1, "formula": "C3H5O2", "compartment": "p", "id": "ppa_p"}, {"name": "Pantetheine 4'-phosphate", "notes": {"original_bigg_ids": ["pan4p_c"]}, "charge": -2, "formula": "C11H21N2O7PS", "compartment": "c", "id": "pan4p_c"}, {"name": "N-((R)-4-Phosphopantothenoyl)-L-cysteine", "notes": {"original_bigg_ids": ["4ppcys_c"]}, "charge": -3, "formula": "C12H20N2O9PS", "compartment": "c", "id": "4ppcys_c"}, {"name": "Alpha-D-Ribose 1-phosphate", "notes": {"original_bigg_ids": ["r1p_c"]}, "charge": -2, "formula": "C5H9O8P", "compartment": "c", "id": "r1p_c"}, {"name": "3-(4-Hydroxyphenyl)pyruvate", "notes": {"original_bigg_ids": ["34hpp_c"]}, "charge": -1, "formula": "C9H7O4", "compartment": "c", "id": "34hpp_c"}, {"name": "Phenylpropanoate", "notes": {"original_bigg_ids": ["pppn_c"]}, "charge": -1, "formula": "C9H9O2", "compartment": "c", "id": "pppn_c"}, {"name": "Phenylpropanoate", "notes": {"original_bigg_ids": ["pppn_p"]}, "charge": -1, "formula": "C9H9O2", "compartment": "p", "id": "pppn_p"}, {"name": "Phosphonate", "notes": {"original_bigg_ids": ["ppt_p"]}, "charge": -2, "formula": "HO3P", "compartment": "p", "id": "ppt_p"}, {"name": "2-(Formamido)-N1-(5-phospho-D-ribosyl)acetamidine", "notes": {"original_bigg_ids": ["fpram_c"]}, "charge": -1, "formula": "C8H15N3O8P", "compartment": "c", "id": "fpram_c"}, {"name": "1-(5-Phosphoribosyl)-AMP", "notes": {"original_bigg_ids": ["prbamp_c"]}, "charge": -4, "formula": "C15H19N5O14P2", "compartment": "c", "id": "prbamp_c"}, {"name": 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"notes": {"original_bigg_ids": ["drib_e"]}, "charge": 0, "formula": "C5H10O4", "compartment": "e", "id": "drib_e"}, {"name": "4-Hydroxy-L-threonine", "notes": {"original_bigg_ids": ["4hthr_p"]}, "charge": 0, "formula": "C4H9NO4", "compartment": "p", "id": "4hthr_p"}, {"name": "D-Glycerate 2-phosphate", "notes": {"original_bigg_ids": ["2pg_e"]}, "charge": -3, "formula": "C3H4O7P", "compartment": "e", "id": "2pg_e"}, {"name": "Flavodoxin (reduced) - obsolete", "notes": {"original_bigg_ids": ["fldrd_c"]}, "charge": 0, "formula": "XH2", "compartment": "c", "id": "fldrd_c"}, {"name": "Flavodoxin (oxidized) - obsolete", "notes": {"original_bigg_ids": ["fldox_c"]}, "charge": 0, "formula": "X", "compartment": "c", "id": "fldox_c"}, {"name": "4-hydroxy-5-methyl-3(2H)-furanone", "notes": {"original_bigg_ids": ["hmfurn_c"]}, "charge": 0, "formula": "C5H6O3", "compartment": "c", "id": "hmfurn_c"}, {"name": "Formamide", "notes": {"original_bigg_ids": ["foam_e"]}, "charge": 0, "formula": "CH3NO", "compartment": "e", "id": "foam_e"}, {"name": "Tricarballylate", "notes": {"original_bigg_ids": ["tcb_p"]}, "charge": -3, "formula": "C6H5O6", "compartment": "p", "id": "tcb_p"}, {"notes": {"original_bigg_ids": ["colipaOA_e"]}, "compartment": "e", "name": "Membrane LPS mixture", "charge": 0, "id": "colipaOA_e"}, {"name": "Salmochelin-SX", "notes": {"original_bigg_ids": ["salchsx_e"]}, "charge": -1, "formula": "C16H21NO11", "compartment": "e", "id": "salchsx_e"}, {"name": "2-Aminoethylphosphonate", "notes": {"original_bigg_ids": ["AEP_e"]}, "charge": -1, "formula": "C2H7N1O3P1", "compartment": "e", "id": "AEP_e"}, {"name": "2-3-dihydroxybenzoylserine trimer", "notes": {"original_bigg_ids": ["23dhbzs3_c"]}, "charge": 0, "formula": "C30H29N3O16", "compartment": "c", "id": "23dhbzs3_c"}, {"name": "Oxaloacetate", "notes": {"original_bigg_ids": ["oaa_p"]}, "charge": -2, "formula": "C4H2O5", "compartment": "p", "id": "oaa_p"}, {"name": "Phosphoenolpyruvate", "notes": {"original_bigg_ids": ["pep_e"]}, "charge": -3, "formula": "C3H2O6P", "compartment": "e", "id": "pep_e"}, {"name": "Tetrathionate", "notes": {"original_bigg_ids": ["tet_p"]}, "charge": -2, "formula": "O6S4", "compartment": "p", "id": "tet_p"}, {"name": "Pseudouridine 5  phosphate C9H11N2O9P", "notes": {"original_bigg_ids": ["psd5p_c"]}, "charge": -2, "formula": "C9H13N2O9P", "compartment": "c", "id": "psd5p_c"}, {"name": "O-antigen-x20-core-oligosaccharide-lipid-A", "notes": {"original_bigg_ids": ["colipa20Oag_e"]}, "charge": -11, "formula": "C656H1103N2O440P4", "compartment": "e", "id": "colipa20Oag_e"}, {"name": "D-biotin d-sulfoxide", "notes": {"original_bigg_ids": ["btnso_c"]}, "charge": -1, "formula": "C10H15N2O4S", "compartment": "c", "id": "btnso_c"}, {"name": "Salmochelin-SX", "notes": {"original_bigg_ids": ["salchsx_p"]}, "charge": -1, "formula": "C16H21NO11", "compartment": "p", "id": "salchsx_p"}, {"name": "Residual-atoms-of-reaction-DMBZIDSYN", "notes": {"original_bigg_ids": ["remnant1_e"]}, "charge": 0, "formula": "C4H2N2O3", "compartment": "e", "id": "remnant1_e"}, {"name": "Undecaprenyl diphosphate galactose-rhamnose-mannose-abequose-acetyl", "notes": {"original_bigg_ids": ["udcpo5_e"]}, "charge": -2, "formula": "C81H134O25P2", "compartment": "e", "id": "udcpo5_e"}, {"name": "N Ribosylnicotinamide C11H15N2O5", "notes": {"original_bigg_ids": ["rnam_e"]}, "charge": 1, "formula": "C11H15N2O5", "compartment": "e", "id": "rnam_e"}, {"name": "Cis-Aconitate", "notes": {"original_bigg_ids": ["acon_DASH_C_p"]}, "charge": -3, "formula": "C6H3O6", "compartment": "p", "id": "acon_C_p"}, {"name": "Adenosylcobalamin-phosphate", "notes": {"original_bigg_ids": ["adocblp_c"]}, "charge": -2, "formula": "C72H99CoN18O20P2", "compartment": "c", "id": "adocblp_c"}, {"name": "Cobalt-precorrin-2", "notes": {"original_bigg_ids": ["codscl2_c"]}, "charge": -7, "formula": "C42H39CoN4O16", "compartment": "c", "id": "codscl2_c"}, {"name": "Aminoimidazole-riboside", "notes": {"original_bigg_ids": ["airs_e"]}, "charge": 0, "formula": "C8H13N3O4", "compartment": "e", "id": "airs_e"}, {"name": "2-Oxohept-3-ene-1,7-dioate", "notes": {"original_bigg_ids": ["2ohed_c"]}, "charge": -2, "formula": "C7H6O5", "compartment": "c", "id": "2ohed_c"}, {"name": "Deoxyribose C5H10O4", "notes": {"original_bigg_ids": ["drib_p"]}, "charge": 0, "formula": "C5H10O4", "compartment": "p", "id": "drib_p"}, {"name": "Ferrioxamine-G-fe", "notes": {"original_bigg_ids": ["feroxGfe_e"]}, "charge": 0, "formula": "C27H46FeN6O10", "compartment": "e", "id": "feroxGfe_e"}, {"name": "2-Aminoethylphosphonate", "notes": {"original_bigg_ids": ["AEP_p"]}, "charge": -1, "formula": "C2H7N1O3P1", "compartment": "p", "id": "AEP_p"}, {"name": "Undecaprenyl diphosphate galactose-rhamnose-mannose-abequose", "notes": {"original_bigg_ids": ["udcpo4_e"]}, "charge": -2, "formula": "C79H132O24P2", "compartment": "e", "id": "udcpo4_e"}, {"name": "D-Tagatose", "notes": {"original_bigg_ids": ["tag_DASH_D_e"]}, "charge": 0, "formula": "C6H12O6", "compartment": "e", "id": "tag__D_e"}, {"name": "Salmochelin-S2-Fe-III", "notes": {"original_bigg_ids": ["salchs2fe_c"]}, "charge": 0, "formula": "C42FeH49N3O26", "compartment": "c", "id": "salchs2fe_c"}, {"name": "Salmochelin-S2-Fe-III", "notes": {"original_bigg_ids": ["salchs2fe_p"]}, "charge": 0, "formula": "C42FeH49N3O26", "compartment": "p", "id": "salchs2fe_p"}, {"name": "D-Tagatose", "notes": {"original_bigg_ids": ["tag_DASH_D_p"]}, "charge": 0, "formula": "C6H12O6", "compartment": "p", "id": "tag__D_p"}, {"name": "D-Glycerate 2-phosphate", "notes": {"original_bigg_ids": ["2pg_p"]}, "charge": -3, "formula": "C3H4O7P", "compartment": "p", "id": "2pg_p"}, {"name": "Ferrioxamine-G", "notes": {"original_bigg_ids": ["feroxG_e"]}, "charge": 0, "formula": "C27H46N6O10", "compartment": "e", "id": "feroxG_e"}, {"name": "Formamide", "notes": {"original_bigg_ids": ["foam_p"]}, "charge": 0, "formula": "CH3NO", "compartment": "p", "id": "foam_p"}, {"name": "4-Hydroxy-benzyl alcohol", "notes": {"original_bigg_ids": ["4hba_c"]}, "charge": 0, "formula": "C7H8O2", "compartment": "c", "id": "4hba_c"}, {"notes": {"original_bigg_ids": ["diact_e"]}, "compartment": "e", "name": "Diacetyl", "charge": 0, "id": "diact_e"}, {"notes": {"original_bigg_ids": ["indpyr_c"]}, "compartment": "c", "name": "Indolepyruvate C11H8NO3", "charge": 0, "id": "indpyr_c"}, {"notes": {"original_bigg_ids": ["pprdn_c"]}, "compartment": "c", "name": "Piperideine", "charge": 0, "id": "pprdn_c"}, {"notes": {"original_bigg_ids": ["5aptn_c"]}, "compartment": "c", "name": "5-Aminopentanoate", "charge": 0, "id": "5aptn_c"}, {"notes": {"original_bigg_ids": ["cellb_e"]}, "compartment": "e", "name": "Cellobiose", "charge": 0, "id": "cellb_e"}, {"notes": {"original_bigg_ids": ["btd_DASH_RR_e"]}, "compartment": "e", "name": " R R  2 3 Butanediol C4H10O2", "charge": 0, "id": "btd_RR_e"}, {"notes": {"original_bigg_ids": ["13ppd_e"]}, "compartment": "e", "name": "1,3-Propanediol", "charge": 0, "id": "13ppd_e"}, {"notes": {"original_bigg_ids": ["rbt_e"]}, "compartment": "e", "name": "Ribitol", "charge": 0, "id": "rbt_e"}, {"notes": {"original_bigg_ids": ["oxptn_c"]}, "compartment": "c", "name": "5-Oxopentanoate", "charge": 0, "id": "oxptn_c"}, {"notes": {"original_bigg_ids": ["glutar_c"]}, "compartment": "c", "name": "Glutarate", "charge": 0, "id": "glutar_c"}, {"notes": {"original_bigg_ids": ["bz_e"]}, "compartment": "e", "name": "Benzoate", "charge": 0, "id": "bz_e"}, {"name": "3-Oxoadipyl-CoA", "notes": {"original_bigg_ids": ["oxadpcoa_c"]}, "charge": -5, "formula": "C27H37N7O20P3S", "compartment": "c", "id": "oxadpcoa_c"}, {"notes": {"original_bigg_ids": ["glutcoa_c"]}, "compartment": "c", "name": "Glutaryl-CoA", "charge": 0, "id": "glutcoa_c"}, {"notes": {"original_bigg_ids": ["abt_DASH_D_e"]}, "compartment": "e", "name": "D-Arabitol", "charge": 0, "id": "abt__D_e"}, {"name": "S-Methyl-L-methionine", "notes": {"original_bigg_ids": ["mmet_c"]}, "charge": 1, "formula": "C6H14NO2S", "compartment": "c", "id": "mmet_c"}, {"name": "Cyclic diguanosine monophosphate", "notes": {"original_bigg_ids": ["cdigmp_c"]}, "charge": 0, "formula": "C20H22N10O14P2", "compartment": "c", "id": "cdigmp_c"}, {"name": "Fe p", "notes": {"original_bigg_ids": ["fe_e"]}, "charge": 0, "formula": "Fe", "compartment": "e", "id": "fe_e"}, {"name": "KO-KDO-LIPID A", "notes": {"original_bigg_ids": ["kokdolipidA_e"]}, "charge": 0, "formula": "C110H196N2O40P2", "compartment": "e", "id": "kokdolipidA_e"}, {"name": "D Galactosamine 6 phosphate C6H14NO8P", "notes": {"original_bigg_ids": ["galam6p_c"]}, "charge": 0, "formula": "C6H14NO8P", "compartment": "c", "id": "galam6p_c"}, {"name": "4 Hydroxy 3 Nitro Phenylacetaldehyde C8H11NO", "notes": {"original_bigg_ids": ["4h3npacald_p"]}, "charge": 0, "formula": "C8H11NO", "compartment": "p", "id": "4h3npacald_p"}, {"name": "3 Nitrotyramine C8H15N2", "notes": {"original_bigg_ids": ["3ntym_p"]}, "charge": 0, "formula": "C8H15N2", "compartment": "p", "id": "3ntym_p"}, {"name": "Cellobiose", "notes": {"original_bigg_ids": ["cellb_p"]}, "charge": 0, "formula": "C12H22O11", "compartment": "p", "id": "cellb_p"}, {"name": "3 Hydroxyphenylacetic acid C8H8O3", "notes": {"original_bigg_ids": ["3hoxpac_e"]}, "charge": 0, "formula": "C8H8O3", "compartment": "e", "id": "3hoxpac_e"}, {"name": "Penicillin G C16H18N2O4S", "notes": {"original_bigg_ids": ["peng_e"]}, "charge": 0, "formula": "C16H18N2O4S", "compartment": "e", "id": "peng_e"}, {"name": "Penicillin G C16H18N2O4S", "notes": {"original_bigg_ids": ["peng_p"]}, "charge": 0, "formula": "C16H18N2O4S", "compartment": "p", "id": "peng_p"}, {"name": "Raffinose C18H32O16", "notes": {"original_bigg_ids": ["raffin_p"]}, "charge": 0, "formula": "C18H32O16", "compartment": "p", "id": "raffin_p"}, {"name": "Raffinose C18H32O16", "notes": {"original_bigg_ids": ["raffin_e"]}, "charge": 0, "formula": "C18H32O16", "compartment": "e", "id": "raffin_e"}, {"name": "4-Hydroxyphenylacetaldehyde", "notes": {"original_bigg_ids": ["4hoxpacd_c"]}, "charge": 0, "formula": "C8H8O2", "compartment": "c", "id": "4hoxpacd_c"}, {"name": "D Galactosamine C6H13NO5", "notes": {"original_bigg_ids": ["galam_p"]}, "charge": 0, "formula": "C6H13NO5", "compartment": "p", "id": "galam_p"}, {"name": "R1 glucosyl inner core oligosaccharide lipid A with laurate C135H216N2O68P4", "notes": {"original_bigg_ids": ["gicolipaBR1_c"]}, "charge": 0, "formula": "C135H216N2O68P4", "compartment": "c", "id": "gicolipaBR1_c"}, {"name": "R1 glucosyl glucosyl inner core oligosaccharide lipid A with laurate C141H226N2O73P4", "notes": {"original_bigg_ids": ["ggicolipaBR1_c"]}, "charge": 0, "formula": "C141H226N2O73P4", "compartment": "c", "id": "ggicolipaBR1_c"}, {"name": "3 Hydroxyphenylacetic acid C8H8O3", "notes": {"original_bigg_ids": ["3hoxpac_p"]}, "charge": 0, "formula": "C8H8O3", "compartment": "p", "id": "3hoxpac_p"}, {"name": "2 3 2'3' Tetrakis beta hydroxymyristoyl  D glucosaminyl 1 6 beta D glucosamine 1 4' bisphosphate C68H126N2O23P2", "notes": {"original_bigg_ids": ["lipidA_core_e_p"]}, "charge": 0, "formula": "C68H126N2O23P2", "compartment": "p", "id": "lipidA_core_e_p"}, {"name": "6 Aminopenicillanic acid C8H12N2O3S", "notes": {"original_bigg_ids": ["6apa_p"]}, "charge": 0, "formula": "C8H12N2O3S", "compartment": "p", "id": "6apa_p"}, {"name": "6 Aminopenicillanic acid C8H12N2O3S", "notes": {"original_bigg_ids": ["6apa_e"]}, "charge": 0, "formula": "C8H12N2O3S", "compartment": "e", "id": "6apa_e"}, {"name": "(R)-Methylmalonyl-CoA", "notes": {"original_bigg_ids": ["mmcoa_R_c"]}, "charge": 0, "formula": "C25H35N7O19P3S", "compartment": "c", "id": "mmcoa__R_c"}, {"name": "D Galactosamine C6H13NO5", "notes": {"original_bigg_ids": ["galam_e"]}, "charge": 0, "formula": "C6H13NO5", "compartment": "e", "id": "galam_e"}, {"name": "UDPgalactose", "notes": {"original_bigg_ids": ["udpgal_c"]}, "charge": -2, "formula": "C15H22N2O17P2", "compartment": "c", "id": "udpgal_c"}, {"name": "Core oligosaccharide lipid A with laurate C159H256N2O88P4", "notes": {"original_bigg_ids": ["colipaB_c"]}, "charge": 0, "formula": "C159H256N2O88P4", "compartment": "c", "id": "colipaB_c"}, {"name": "R1 galactosyl glucosyl glucosyl glucosyl inner core oligosaccharide lipid A with laurate C153H246N2O83P4", "notes": {"original_bigg_ids": ["gagggicolipaBR1_c"]}, "charge": 0, "formula": "C153H246N2O83P4", "compartment": "c", "id": "gagggicolipaBR1_c"}, {"name": "R1 glucosyl glucosyl glucosyl inner core oligosaccharide lipid A with laurate C147H236N2O78P4", "notes": {"original_bigg_ids": ["gggicolipaBR1_c"]}, "charge": 0, "formula": "C147H236N2O78P4", "compartment": "c", "id": "gggicolipaBR1_c"}, {"name": "R1 inner core oligosaccharide lipid A  E coli  with laurate C129H206N2O63P4", "notes": {"original_bigg_ids": ["icolipaBR1_c"]}, "charge": 0, "formula": "C129H206N2O63P4", "compartment": "c", "id": "icolipaBR1_c"}, {"name": "Heptosyl phospho heptosyl heptosyl kdo2 lipidA with laurate C122H195N2O54P3", "notes": {"original_bigg_ids": ["hphhlipaB_c"]}, "charge": 0, "formula": "C122H195N2O54P3", "compartment": "c", "id": "hphhlipaB_c"}, {"name": "1' Phosphoethanolamin lipidIVa C70H132N3O26P3", "notes": {"original_bigg_ids": ["enlipidA_LptA_p"]}, "charge": 0, "formula": "C70H132N3O26P3", "compartment": "p", "id": "enlipidA_LptA_p"}, {"name": "1' Phosphoethanolamin lipidIVa C70H132N3O26P3", "notes": {"original_bigg_ids": ["enlipidA_p"]}, "charge": 0, "formula": "C70H132N3O26P3", "compartment": "p", "id": "enlipidA_p"}, {"notes": {"original_bigg_ids": ["LptA_p"]}, "compartment": "p", "name": "Periplasmic lipid A binding protein ", "charge": 0, "id": "LptA_p"}, {"name": "3 Nitrotyramine C8H15N2", "notes": {"original_bigg_ids": ["3ntym_e"]}, "charge": 0, "formula": "C8H15N2", "compartment": "e", "id": "3ntym_e"}, {"name": "3,4-Dihydroxyphenylacetaldehyde", "notes": {"original_bigg_ids": ["34dhpac_c"]}, "charge": 0, "formula": "C8H8O3", "compartment": "c", "id": "34dhpac_c"}, {"name": "4 Hydroxy 3 Nitro Phenylacetic acid C8H10NO2", "notes": {"original_bigg_ids": ["4h3npac_c"]}, "charge": 0, "formula": "C8H10NO2", "compartment": "c", "id": "4h3npac_c"}, {"name": "4 Hydroxy 3 Nitro Phenylacetaldehyde C8H11NO", "notes": {"original_bigg_ids": ["4h3npacald_c"]}, "charge": 0, "formula": "C8H11NO", "compartment": "c", "id": "4h3npacald_c"}, {"name": "Salicin", "notes": {"original_bigg_ids": ["salcn_e"]}, "charge": 0, "formula": "C13H18O7", "compartment": "e", "id": "salcn_e"}, {"name": "Salicin", "notes": {"original_bigg_ids": ["salcn_p"]}, "charge": 0, "formula": "C13H18O7", "compartment": "p", "id": "salcn_p"}, {"name": "1' Phosphoethanolamin lipidIVa C70H132N3O26P3", "notes": {"original_bigg_ids": ["enlipidA_e"]}, "charge": 0, "formula": "C70H132N3O26P3", "compartment": "e", "id": "enlipidA_e"}, {"name": "4 Hydroxyphenylacetic acid C8H8O3", "notes": {"original_bigg_ids": ["4hoxpac_e"]}, "charge": 0, "formula": "C8H8O3", "compartment": "e", "id": "4hoxpac_e"}, {"name": "Phenylacetic acid", "notes": {"original_bigg_ids": ["pac_e"]}, "charge": 0, "formula": "C8H7O2", "compartment": "e", "id": "pac_e"}, {"name": "N Acetyl D galactosamine 6 phosphate C8H16NO9P", "notes": {"original_bigg_ids": ["acgal6p_c"]}, "charge": 0, "formula": "C8H16NO9P", "compartment": "c", "id": "acgal6p_c"}, {"name": "R1 inner core oligosaccharide lipid A  E coli  C131H210N2O63P4", "notes": {"original_bigg_ids": ["icolipaAR1_c"]}, "charge": 0, "formula": "C131H210N2O63P4", "compartment": "c", "id": "icolipaAR1_c"}, {"name": "Heptosyl phospho heptosyl heptosyl kdo2 lipidA C131H211N2O60P3", "notes": {"original_bigg_ids": ["hphhlipaA_c"]}, "charge": 0, "formula": "C131H211N2O60P3", "compartment": "c", "id": "hphhlipaA_c"}, {"name": "R1 glucosyl glucosyl inner core oligosaccharide lipid A C143H230N2O73P4", "notes": {"original_bigg_ids": ["ggicolipaAR1_c"]}, "charge": 0, "formula": "C143H230N2O73P4", "compartment": "c", "id": "ggicolipaAR1_c"}, {"name": "R1 glucosyl inner core oligosaccharide lipid A C137H220N2O68P4", "notes": {"original_bigg_ids": ["gicolipaAR1_c"]}, "charge": 0, "formula": "C137H220N2O68P4", "compartment": "c", "id": "gicolipaAR1_c"}, {"name": "3 Hydroxyphenylacetic acid C8H8O3", "notes": {"original_bigg_ids": ["3hoxpac_c"]}, "charge": 0, "formula": "C8H8O3", "compartment": "c", "id": "3hoxpac_c"}, {"name": "Phenylacetic acid", "notes": {"original_bigg_ids": ["pac_p"]}, "charge": 0, "formula": "C8H7O2", "compartment": "p", "id": "pac_p"}, {"name": "Core oligosaccharide lipid A C161H260N2O88P4", "notes": {"original_bigg_ids": ["colipaA_c"]}, "charge": 0, "formula": "C161H260N2O88P4", "compartment": "c", "id": "colipaA_c"}, {"name": "R1 galactosyl glucosyl glucosyl glucosyl inner core oligosaccharide lipid A C155H250N2O83P4", "notes": {"original_bigg_ids": ["gagggicolipaAR1_c"]}, "charge": 0, "formula": "C155H250N2O83P4", "compartment": "c", "id": "gagggicolipaAR1_c"}, {"name": "R1 glucosyl glucosyl glucosyl inner core oligosaccharide lipid A C149H240N2O78P4", "notes": {"original_bigg_ids": ["gggicolipaAR1_c"]}, "charge": 0, "formula": "C149H240N2O78P4", "compartment": "c", "id": "gggicolipaAR1_c"}, {"name": " O6 antigen x4 core oligosaccharide lipid A O225H390N2O120P2", "notes": {"original_bigg_ids": ["o6a4colipa_e"]}, "charge": 0, "formula": "O225H390N2O120P2", "compartment": "e", "id": "o6a4colipa_e"}, {"name": "D-Ribulose", "notes": {"original_bigg_ids": ["rbl_DASH_D_c"]}, "charge": 0, "formula": "C5H10O5", "compartment": "c", "id": "rbl__D_c"}, {"name": "D Arabinose C5H10O5", "notes": {"original_bigg_ids": ["arab_DASH_D_c"]}, "charge": 0, "formula": "C5H10O5", "compartment": "c", "id": "arab__D_c"}, {"name": "D Arabinose C5H10O5", "notes": {"original_bigg_ids": ["arab_DASH_D_e"]}, "charge": 0, "formula": "C5H10O5", "compartment": "e", "id": "arab__D_e"}, {"name": "D Arabinose C5H10O5", "notes": {"original_bigg_ids": ["arab_DASH_D_p"]}, "charge": 0, "formula": "C5H10O5", "compartment": "p", "id": "arab__D_p"}], "version": 1, "id": "iECD_1391"}